| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87198790
Identifier: 87198790
GI number: 87198790
Start: 817414
End: 818019
Strand: Reverse
Name: 87198790
Synonym: Saro_0767
Alternate gene names: NA
Gene position: 818019-817414 (Counterclockwise)
Preceding gene: 87198791
Following gene: 87198789
Centisome position: 22.97
GC content: 62.87
Gene sequence:
>606_bases ATGAGCCCGTTGCGCCCCTTCGTTGGAGTTGCCCTGATCGGTAGCACGTTGCTGCTGCCGGTGACGGCGGAGGCGCAACT GGCCGCGACGGTGGATCGGGCCTTTCCCGTGAACGGGAACGCGCCGCAGGTGTGTTCGATCCAACCCGCTAAACTCCAGG CTGGAGAACTGGTCAATTTTCGTGGCCTCGACGGTGACACATTGCAGATCGAGGAGTTGACGGACCAGCGGACGCTCGCA GCCAGGCCGGCTAGCGTTACCGTATCGTTCGACGCCGTCTGCAATTTCCCTCACCGGGTGCGCATAGAATCCCAGAACAA CGGCCTTTGGCCAACTGATGGCAGCATGAGCACGCAGGCGCAGGGGTTTGCCTATGCTCTGCCCTACCGGACCCGTATCG ATTGGGGGTCCGCCAGCGGCAATTTCCTGGCCGACGCCAAAGTGCGCCGACTGGTGGAAGAGCGGGTCAACGTCAACGCG GCGACCGCGGGCGTTCTCAGCCTGCGCATAGAAATCGACGCCGGTGCCTCCAATGTGCAGACCAACGCCCCGGTGCTTGC CGGCGTTTACGGAGACACACTGCGCATTTTCATGGAGCCCCGCTGA
Upstream 100 bases:
>100_bases TCGGGGGCTTTGCAACCACTGGAGGAAGTAACCTGCGGCCAGTGGCCGATACAGCGTATCGTGGCCTCGTCACGGTAACC CTTAGCGCCGCGAACTGACC
Downstream 100 bases:
>100_bases TGCGTGCTTCGCTCATCCTTGTCTTGCCAGCAGCATTTGCCTGCTCTGCCGCTTTTGCGCAGGAGATCGACACCGACAGT CAGCGGCTGGAGATGATCGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 201; Mature: 200
Protein sequence:
>201_residues MSPLRPFVGVALIGSTLLLPVTAEAQLAATVDRAFPVNGNAPQVCSIQPAKLQAGELVNFRGLDGDTLQIEELTDQRTLA ARPASVTVSFDAVCNFPHRVRIESQNNGLWPTDGSMSTQAQGFAYALPYRTRIDWGSASGNFLADAKVRRLVEERVNVNA ATAGVLSLRIEIDAGASNVQTNAPVLAGVYGDTLRIFMEPR
Sequences:
>Translated_201_residues MSPLRPFVGVALIGSTLLLPVTAEAQLAATVDRAFPVNGNAPQVCSIQPAKLQAGELVNFRGLDGDTLQIEELTDQRTLA ARPASVTVSFDAVCNFPHRVRIESQNNGLWPTDGSMSTQAQGFAYALPYRTRIDWGSASGNFLADAKVRRLVEERVNVNA ATAGVLSLRIEIDAGASNVQTNAPVLAGVYGDTLRIFMEPR >Mature_200_residues SPLRPFVGVALIGSTLLLPVTAEAQLAATVDRAFPVNGNAPQVCSIQPAKLQAGELVNFRGLDGDTLQIEELTDQRTLAA RPASVTVSFDAVCNFPHRVRIESQNNGLWPTDGSMSTQAQGFAYALPYRTRIDWGSASGNFLADAKVRRLVEERVNVNAA TAGVLSLRIEIDAGASNVQTNAPVLAGVYGDTLRIFMEPR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21524; Mature: 21392
Theoretical pI: Translated: 5.24; Mature: 5.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPLRPFVGVALIGSTLLLPVTAEAQLAATVDRAFPVNGNAPQVCSIQPAKLQAGELVNF CCCCCHHHHHHHHCCEEEEEECCCCEEEEEHHHEECCCCCCCCEEECCCCCCCCCCEEEE RGLDGDTLQIEELTDQRTLAARPASVTVSFDAVCNFPHRVRIESQNNGLWPTDGSMSTQA ECCCCCEEEEEECCCCCEEEECCCEEEEEEHHHCCCCEEEEEECCCCCCCCCCCCCCCCC QGFAYALPYRTRIDWGSASGNFLADAKVRRLVEERVNVNAATAGVLSLRIEIDAGASNVQ CCEEEECCCEEEECCCCCCCCEEEHHHHHHHHHHHCCCCEEEEEEEEEEEEEECCCCCCC TNAPVLAGVYGDTLRIFMEPR CCCCEEEEECCCEEEEEECCC >Mature Secondary Structure SPLRPFVGVALIGSTLLLPVTAEAQLAATVDRAFPVNGNAPQVCSIQPAKLQAGELVNF CCCCHHHHHHHHCCEEEEEECCCCEEEEEHHHEECCCCCCCCEEECCCCCCCCCCEEEE RGLDGDTLQIEELTDQRTLAARPASVTVSFDAVCNFPHRVRIESQNNGLWPTDGSMSTQA ECCCCCEEEEEECCCCCEEEECCCEEEEEEHHHCCCCEEEEEECCCCCCCCCCCCCCCCC QGFAYALPYRTRIDWGSASGNFLADAKVRRLVEERVNVNAATAGVLSLRIEIDAGASNVQ CCEEEECCCEEEECCCCCCCCEEEHHHHHHHHHHHCCCCEEEEEEEEEEEEEECCCCCCC TNAPVLAGVYGDTLRIFMEPR CCCCEEEEECCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA