| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87198632
Identifier: 87198632
GI number: 87198632
Start: 655382
End: 656206
Strand: Reverse
Name: 87198632
Synonym: Saro_0608
Alternate gene names: NA
Gene position: 656206-655382 (Counterclockwise)
Preceding gene: 87198633
Following gene: 87198631
Centisome position: 18.42
GC content: 68.85
Gene sequence:
>825_bases ATGAGCGCGACACTCGCCAATCCACTCGCAGCCCGCGATCACGCCCGCGCCATGGCCGGCACCGTGGTCGAGGCCATGCC GGTCCTGCCGCCCGTCGCCAAAGACACGCCGGCCGGCGTGGCCGCCGACGATCTCGTCTGGGAAGAAACGATAGCCGCCG GCGGATATGCCACGCGCAGGCTGTCGCGCGGAACGCGGCTGCGACTCGTGGACATCAAGGGCGACGCCTGCGCCTCGCTT CTCCTGTTCAACGCGGAAATGCCGACCGAGCGGCTCAACGTGGCTGACACCGTGAAAGTGCAGTGGAACGCCTACCTCGG CCAGGGCAAGCTGCTGCTCTCCGACATGGGCCGCGTCCTGATGAGCATCGTCGAGGACGACGCGGGCACGCACGATGCCT TCTGCGGCACGTCGAACGCGGCAAGCAATGCCGCGCGCTATGGCGACGGCCGCAACAGCGGGTCCTTCCCCAACGGTCGT GACCGCCTGCTGCTGGGCGCGGCGAAGCACGGTCTGCAACGGCGCGACGTCCACCCGTGCGTGAACCTTTTCAAGGGCGC TGCAATCGAGGCCGATGGCACCATCGTACCCGATGTCGGCCCTTTCCCGGCTGGCCGCCGCATGGTCCTGCGCGCGGAAA TGGACGTGATCGTCGTGATCGCGAACTGCCCGCACGTGCTGGACCCGCGCCCCGAATGGACGTCCACCCCCCTGCGGGCG ACCGCCTGGCGAGGCCCGGTCACGCCCCAGGACGATCCGATCCGCACGGCAACGCCCGAAGGCCTGCGCGCCTACCTGAA CGTCGAAGACTACTTCCGCCGCTGA
Upstream 100 bases:
>100_bases GGGTGCGCGGGGTGCACCAGCTCAAGCTCGTCACCACGACCGCCCTCCTGCCGCCGCTCTACGAGCCGGATGCGGGCGAA AGCAGCAACGGAGCCGCCGC
Downstream 100 bases:
>100_bases GAAGGAACCGGTCACCATGAGCGTCGATCCCCATCTTTCCGGGCTTTCCGGCACCGTTCTGCACGACGTCGTCGTGCCTG CCCGCGCGCCGTGGCTCCAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 274; Mature: 273
Protein sequence:
>274_residues MSATLANPLAARDHARAMAGTVVEAMPVLPPVAKDTPAGVAADDLVWEETIAAGGYATRRLSRGTRLRLVDIKGDACASL LLFNAEMPTERLNVADTVKVQWNAYLGQGKLLLSDMGRVLMSIVEDDAGTHDAFCGTSNAASNAARYGDGRNSGSFPNGR DRLLLGAAKHGLQRRDVHPCVNLFKGAAIEADGTIVPDVGPFPAGRRMVLRAEMDVIVVIANCPHVLDPRPEWTSTPLRA TAWRGPVTPQDDPIRTATPEGLRAYLNVEDYFRR
Sequences:
>Translated_274_residues MSATLANPLAARDHARAMAGTVVEAMPVLPPVAKDTPAGVAADDLVWEETIAAGGYATRRLSRGTRLRLVDIKGDACASL LLFNAEMPTERLNVADTVKVQWNAYLGQGKLLLSDMGRVLMSIVEDDAGTHDAFCGTSNAASNAARYGDGRNSGSFPNGR DRLLLGAAKHGLQRRDVHPCVNLFKGAAIEADGTIVPDVGPFPAGRRMVLRAEMDVIVVIANCPHVLDPRPEWTSTPLRA TAWRGPVTPQDDPIRTATPEGLRAYLNVEDYFRR >Mature_273_residues SATLANPLAARDHARAMAGTVVEAMPVLPPVAKDTPAGVAADDLVWEETIAAGGYATRRLSRGTRLRLVDIKGDACASLL LFNAEMPTERLNVADTVKVQWNAYLGQGKLLLSDMGRVLMSIVEDDAGTHDAFCGTSNAASNAARYGDGRNSGSFPNGRD RLLLGAAKHGLQRRDVHPCVNLFKGAAIEADGTIVPDVGPFPAGRRMVLRAEMDVIVVIANCPHVLDPRPEWTSTPLRAT AWRGPVTPQDDPIRTATPEGLRAYLNVEDYFRR
Specific function: Unknown
COG id: COG3665
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29464; Mature: 29333
Theoretical pI: Translated: 7.03; Mature: 7.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSATLANPLAARDHARAMAGTVVEAMPVLPPVAKDTPAGVAADDLVWEETIAAGGYATRR CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHH LSRGTRLRLVDIKGDACASLLLFNAEMPTERLNVADTVKVQWNAYLGQGKLLLSDMGRVL HCCCCEEEEEEECCCHHEEEEEECCCCCHHHCCCCEEEEEEEEEEECCCEEHHHHHHHHH MSIVEDDAGTHDAFCGTSNAASNAARYGDGRNSGSFPNGRDRLLLGAAKHGLQRRDVHPC HHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHCCCCCCHHHH VNLFKGAAIEADGTIVPDVGPFPAGRRMVLRAEMDVIVVIANCPHVLDPRPEWTSTPLRA HHHHCCCEECCCCEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCEE TAWRGPVTPQDDPIRTATPEGLRAYLNVEDYFRR ECCCCCCCCCCCCCCCCCCHHHEEEECHHHHHCC >Mature Secondary Structure SATLANPLAARDHARAMAGTVVEAMPVLPPVAKDTPAGVAADDLVWEETIAAGGYATRR CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHH LSRGTRLRLVDIKGDACASLLLFNAEMPTERLNVADTVKVQWNAYLGQGKLLLSDMGRVL HCCCCEEEEEEECCCHHEEEEEECCCCCHHHCCCCEEEEEEEEEEECCCEEHHHHHHHHH MSIVEDDAGTHDAFCGTSNAASNAARYGDGRNSGSFPNGRDRLLLGAAKHGLQRRDVHPC HHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHCCCCCCHHHH VNLFKGAAIEADGTIVPDVGPFPAGRRMVLRAEMDVIVVIANCPHVLDPRPEWTSTPLRA HHHHCCCEECCCCEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCEE TAWRGPVTPQDDPIRTATPEGLRAYLNVEDYFRR ECCCCCCCCCCCCCCCCCCHHHEEEECHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA