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The map label for this gene is ydaL [C]

Identifier: 87198606

GI number: 87198606

Start: 628691

End: 629263

Strand: Reverse

Name: ydaL [C]

Synonym: Saro_0582

Alternate gene names: 87198606

Gene position: 629263-628691 (Counterclockwise)

Preceding gene: 87198607

Following gene: 87198598

Centisome position: 17.67

GC content: 74.52

Gene sequence:

>573_bases
ATGCGCGCGCCGCGCGGCCTTTCGCCGGACGAGGCGGAGCTGTGGGAGAAGGTCGCCGCGACGATCAAGCCCATGCATCC
CGCCCGCCCCAAGGCGCGTGCCGTGGCGGCAGTGCCCGCAACCGACGTGGCAGTCGCCGCCCCGCCTGCCAGGCGGATCA
AAGGCCGCGTGCCGCCGCCGCTTCCCGCCCCCGCGCCGACCCCGATCAAGCGCCCGCTGGAAAGCCATGGCCTCGATTCG
AGCTGGGACCGCAAGCTGGCGCGCGGCGCGATCGTGCCGGACGTGACCATCGACCTGCACGGCCTCGGCCTCGACGCGGC
CCACGCCCGGCTGACCGGCGGCATCGCGCAGGCGCTGGCGATGGGCGCGCGGGTGATCCTGCTGATCGCGGGCAAGCACC
GCCCGCACGACGAACACGACCTGCGCGGTTCGCGGCGCGGGGCGATCCGGGCCAAGCTGCTCGACTGGCTGGCGCACAGC
GCTCACGCATCGAACATCGCCGCCGTACGCCCTGCCCAGCCTCGGCACGGCGGGGCGGGCGCGGTCTACATCGTGCTCAG
GAAAGGGCGCTGA

Upstream 100 bases:

>100_bases
CCGGCGCGGAGGCACGGCAGGTCGCGGGCGGCATGAGCGCGCGCGGCCGCGCGCTGCTCCTCCTGCCGAAGGGGACGCTC
GAGCGTCTGAACCAGCGCTG

Downstream 100 bases:

>100_bases
GGGCAATCCGCCGGTAGATGCGCTGGAGGACGCGGAGGTCTTCCATAGCGACGGCCTCGTCCTTCTTGTGCATCGTGGCG
TTGCACAGGCCGAACTCGAC

Product: Smr protein/MutS2

Products: NA

Alternate protein names: Smr Domain-Containing Protein

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MRAPRGLSPDEAELWEKVAATIKPMHPARPKARAVAAVPATDVAVAAPPARRIKGRVPPPLPAPAPTPIKRPLESHGLDS
SWDRKLARGAIVPDVTIDLHGLGLDAAHARLTGGIAQALAMGARVILLIAGKHRPHDEHDLRGSRRGAIRAKLLDWLAHS
AHASNIAAVRPAQPRHGGAGAVYIVLRKGR

Sequences:

>Translated_190_residues
MRAPRGLSPDEAELWEKVAATIKPMHPARPKARAVAAVPATDVAVAAPPARRIKGRVPPPLPAPAPTPIKRPLESHGLDS
SWDRKLARGAIVPDVTIDLHGLGLDAAHARLTGGIAQALAMGARVILLIAGKHRPHDEHDLRGSRRGAIRAKLLDWLAHS
AHASNIAAVRPAQPRHGGAGAVYIVLRKGR
>Mature_190_residues
MRAPRGLSPDEAELWEKVAATIKPMHPARPKARAVAAVPATDVAVAAPPARRIKGRVPPPLPAPAPTPIKRPLESHGLDS
SWDRKLARGAIVPDVTIDLHGLGLDAAHARLTGGIAQALAMGARVILLIAGKHRPHDEHDLRGSRRGAIRAKLLDWLAHS
AHASNIAAVRPAQPRHGGAGAVYIVLRKGR

Specific function: Unknown

COG id: COG2840

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20106; Mature: 20106

Theoretical pI: Translated: 11.95; Mature: 11.95

Prosite motif: PS50828 SMR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAPRGLSPDEAELWEKVAATIKPMHPARPKARAVAAVPATDVAVAAPPARRIKGRVPPP
CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHEEEECCCCCEEEECCCHHHHCCCCCCC
LPAPAPTPIKRPLESHGLDSSWDRKLARGAIVPDVTIDLHGLGLDAAHARLTGGIAQALA
CCCCCCCCCCCCHHHCCCCCHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
MGARVILLIAGKHRPHDEHDLRGSRRGAIRAKLLDWLAHSAHASNIAAVRPAQPRHGGAG
HCCEEEEEEECCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC
AVYIVLRKGR
EEEEEEECCC
>Mature Secondary Structure
MRAPRGLSPDEAELWEKVAATIKPMHPARPKARAVAAVPATDVAVAAPPARRIKGRVPPP
CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHEEEECCCCCEEEECCCHHHHCCCCCCC
LPAPAPTPIKRPLESHGLDSSWDRKLARGAIVPDVTIDLHGLGLDAAHARLTGGIAQALA
CCCCCCCCCCCCHHHCCCCCHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
MGARVILLIAGKHRPHDEHDLRGSRRGAIRAKLLDWLAHSAHASNIAAVRPAQPRHGGAG
HCCEEEEEEECCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC
AVYIVLRKGR
EEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA