| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87198584
Identifier: 87198584
GI number: 87198584
Start: 609600
End: 610397
Strand: Reverse
Name: 87198584
Synonym: Saro_0560
Alternate gene names: NA
Gene position: 610397-609600 (Counterclockwise)
Preceding gene: 87198585
Following gene: 87198582
Centisome position: 17.14
GC content: 68.55
Gene sequence:
>798_bases ATGGCTGAAGCGCTTCTGGTGAACCTGGTGGTTCTCGTGCTGGGCATGCTGGCGCTGTGGCGCGTGGCGGTGCGCATCGA CGATGTCAGCTTCATCGACGCCGTCTGGGGCGGCGGCATGGGGGTGCTTGCGCTGGTGTCCTGGCTTCACGTTCCGGGCG GACCGGGAGTGCGGGCGCACCTCATCGCCGCCATGGCCGCGATCTGGGCGGCCCGGCTGGCCTGGCATCTCTACACCCGC TGGCGCGCCAATGGAGAGGACCCACGCTATGCGCGCATCCTCGGCAAGGCGCGGGCGCGCGGACAATACGGTTCGGCAGC GCTCAAGGTCGTGTTCGCACCGCAGGCCGTGCTGTTGTTCCTGACCTGCCTGCCCGCGCAACTGGGCGTTCTGGCAAGCA CGGCCCCCGCACCACTCGGCCCGCTTGCCGTGGCGGGTGCGGCGGTATGGCTCGTCGGCATCCTGTTCGAAGCTGTCGGC GATGAGCAGCTCAAGCGCTTCCTTGCCGATCCCGCCAGCAAGGGCAAAGTGCTGGACACCGGCCTTTGGCGCTTCACCCG CCACCCCAACTATTTCGGCGATGCCTGCGTGTGGTGGGGCATCTGGCTTGCCGCAGCGGACGCGGGCCTGTGGGTGGCGC TGGCGAGCCTTGTCGGCCCGGTGTTCCTCACGTTCACCCTCACCCGCTGGTCGGGCAAACCCCTGCTGGAAAGGGGCATG GCGGAACGGCGGCCAGGCTATGCCGAGTATGTCCGCCGGACGTCGGGGTTCGTGCCCTGGTGGCCGAAAAGCGGTTAG
Upstream 100 bases:
>100_bases GGAGATTACGATGCCGACATGGCGCGGATCTTCGAGGTCTATCGATCGGTCACGCCCAAGCACCCGGAACGCGGGCTGAC GAAGCTGCCGGAGAAAGCTG
Downstream 100 bases:
>100_bases GCCGGCGCAAGGACCATCTTACCCCTTTACCACCAGCGCCCGCACCTCCTGCGGCACGTTGCGCACCGGCACGGCCTTGA TCCAGCTTTCCAGCGCATCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 265; Mature: 264
Protein sequence:
>265_residues MAEALLVNLVVLVLGMLALWRVAVRIDDVSFIDAVWGGGMGVLALVSWLHVPGGPGVRAHLIAAMAAIWAARLAWHLYTR WRANGEDPRYARILGKARARGQYGSAALKVVFAPQAVLLFLTCLPAQLGVLASTAPAPLGPLAVAGAAVWLVGILFEAVG DEQLKRFLADPASKGKVLDTGLWRFTRHPNYFGDACVWWGIWLAAADAGLWVALASLVGPVFLTFTLTRWSGKPLLERGM AERRPGYAEYVRRTSGFVPWWPKSG
Sequences:
>Translated_265_residues MAEALLVNLVVLVLGMLALWRVAVRIDDVSFIDAVWGGGMGVLALVSWLHVPGGPGVRAHLIAAMAAIWAARLAWHLYTR WRANGEDPRYARILGKARARGQYGSAALKVVFAPQAVLLFLTCLPAQLGVLASTAPAPLGPLAVAGAAVWLVGILFEAVG DEQLKRFLADPASKGKVLDTGLWRFTRHPNYFGDACVWWGIWLAAADAGLWVALASLVGPVFLTFTLTRWSGKPLLERGM AERRPGYAEYVRRTSGFVPWWPKSG >Mature_264_residues AEALLVNLVVLVLGMLALWRVAVRIDDVSFIDAVWGGGMGVLALVSWLHVPGGPGVRAHLIAAMAAIWAARLAWHLYTRW RANGEDPRYARILGKARARGQYGSAALKVVFAPQAVLLFLTCLPAQLGVLASTAPAPLGPLAVAGAAVWLVGILFEAVGD EQLKRFLADPASKGKVLDTGLWRFTRHPNYFGDACVWWGIWLAAADAGLWVALASLVGPVFLTFTLTRWSGKPLLERGMA ERRPGYAEYVRRTSGFVPWWPKSG
Specific function: Unknown
COG id: COG3752
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Drosophila melanogaster, GI281365853, Length=214, Percent_Identity=31.7757009345794, Blast_Score=100, Evalue=1e-21, Organism=Drosophila melanogaster, GI28574404, Length=214, Percent_Identity=31.7757009345794, Blast_Score=100, Evalue=1e-21, Organism=Drosophila melanogaster, GI21355723, Length=214, Percent_Identity=31.7757009345794, Blast_Score=100, Evalue=1e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28721; Mature: 28590
Theoretical pI: Translated: 10.53; Mature: 10.53
Prosite motif: PS50244 S5A_REDUCTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEALLVNLVVLVLGMLALWRVAVRIDDVSFIDAVWGGGMGVLALVSWLHVPGGPGVRAH CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHH LIAAMAAIWAARLAWHLYTRWRANGEDPRYARILGKARARGQYGSAALKVVFAPQAVLLF HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHEEEEECHHHHHHH LTCLPAQLGVLASTAPAPLGPLAVAGAAVWLVGILFEAVGDEQLKRFLADPASKGKVLDT HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCEEHH GLWRFTRHPNYFGDACVWWGIWLAAADAGLWVALASLVGPVFLTFTLTRWSGKPLLERGM HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCH AERRPGYAEYVRRTSGFVPWWPKSG HHCCCCHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure AEALLVNLVVLVLGMLALWRVAVRIDDVSFIDAVWGGGMGVLALVSWLHVPGGPGVRAH HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHH LIAAMAAIWAARLAWHLYTRWRANGEDPRYARILGKARARGQYGSAALKVVFAPQAVLLF HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHEEEEECHHHHHHH LTCLPAQLGVLASTAPAPLGPLAVAGAAVWLVGILFEAVGDEQLKRFLADPASKGKVLDT HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCEEHH GLWRFTRHPNYFGDACVWWGIWLAAADAGLWVALASLVGPVFLTFTLTRWSGKPLLERGM HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCH AERRPGYAEYVRRTSGFVPWWPKSG HHCCCCHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA