Definition Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome.
Accession NC_007794
Length 3,561,584

Click here to switch to the map view.

The map label for this gene is yitW [H]

Identifier: 87198226

GI number: 87198226

Start: 206619

End: 207101

Strand: Direct

Name: yitW [H]

Synonym: Saro_0200

Alternate gene names: 87198226

Gene position: 206619-207101 (Clockwise)

Preceding gene: 87198225

Following gene: 87198227

Centisome position: 5.8

GC content: 64.18

Gene sequence:

>483_bases
ATGAGCAGCGAAGATCCCAAATTCGCCGTCGAGGAAGTCGAAGCGGTGGCTGCCCCCCGGCGTGCCTTCGTCGAGGACGC
GGTCGAAGAGACCCCCGCCGAGAAGCTCGAGCGCAAGCGCGACTATCTCGAGGGTTTCCTTGCCGCAAAGCCCGAGGGCG
TTTCCCCCGGCGAGCCGGGCGGCGATATCTACGAGGGCGTGGTGAACGCGCTCAAGGAGATCTTCGACCCGGAAATCCCG
GTCAACATCTATGACCTTGGCCTCATCTACGGCGTCGACGTCTCGGATGACGCTCATGTCATGGTCACGATGACCCTGAC
CACGCCGCACTGCCCGGTGGCCGAATCGATGCCCGGCGAGGTCGAACTGCGCGTCTCGGCCGTTCCCGGCGTGCGCGAGG
CCGAAGTCAATCTCGTCTGGGATCCGCCGTGGGACCCCCAGAAGATGAGCGACGAGGCCAAGCTAGAACTGGGAATGCTC
TGA

Upstream 100 bases:

>100_bases
GCGTTCCCGCCACGGCCCGGGCCAGCTTCGGCATCTACAGCGATGAAAGCGATATCGCCGCCCTCGTGCGCGGCATCGAA
AGGACCAAGAGGATATTCGG

Downstream 100 bases:

>100_bases
CCGCTCCCCATATAGGTGTCACCATGACGACCGAGACCAAAGTCCGCCGCCCCCGCCCCGCCGCCGTGATCCTCACGGCC
AGCGCGGAGGCGCGCATCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MSSEDPKFAVEEVEAVAAPRRAFVEDAVEETPAEKLERKRDYLEGFLAAKPEGVSPGEPGGDIYEGVVNALKEIFDPEIP
VNIYDLGLIYGVDVSDDAHVMVTMTLTTPHCPVAESMPGEVELRVSAVPGVREAEVNLVWDPPWDPQKMSDEAKLELGML

Sequences:

>Translated_160_residues
MSSEDPKFAVEEVEAVAAPRRAFVEDAVEETPAEKLERKRDYLEGFLAAKPEGVSPGEPGGDIYEGVVNALKEIFDPEIP
VNIYDLGLIYGVDVSDDAHVMVTMTLTTPHCPVAESMPGEVELRVSAVPGVREAEVNLVWDPPWDPQKMSDEAKLELGML
>Mature_159_residues
SSEDPKFAVEEVEAVAAPRRAFVEDAVEETPAEKLERKRDYLEGFLAAKPEGVSPGEPGGDIYEGVVNALKEIFDPEIPV
NIYDLGLIYGVDVSDDAHVMVTMTLTTPHCPVAESMPGEVELRVSAVPGVREAEVNLVWDPPWDPQKMSDEAKLELGML

Specific function: Unknown

COG id: COG2151

COG function: function code R; Predicted metal-sulfur cluster biosynthetic enzyme

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the MIP18 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002744 [H]

Pfam domain/function: PF01883 DUF59 [H]

EC number: NA

Molecular weight: Translated: 17495; Mature: 17364

Theoretical pI: Translated: 3.94; Mature: 3.94

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSEDPKFAVEEVEAVAAPRRAFVEDAVEETPAEKLERKRDYLEGFLAAKPEGVSPGEPG
CCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC
GDIYEGVVNALKEIFDPEIPVNIYDLGLIYGVDVSDDAHVMVTMTLTTPHCPVAESMPGE
HHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEECCCCCCCCCCCCC
VELRVSAVPGVREAEVNLVWDPPWDPQKMSDEAKLELGML
EEEEEECCCCCCCCEEEEEECCCCCCHHCCCCCCEEECCC
>Mature Secondary Structure 
SSEDPKFAVEEVEAVAAPRRAFVEDAVEETPAEKLERKRDYLEGFLAAKPEGVSPGEPG
CCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC
GDIYEGVVNALKEIFDPEIPVNIYDLGLIYGVDVSDDAHVMVTMTLTTPHCPVAESMPGE
HHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEECCCCCCCCCCCCC
VELRVSAVPGVREAEVNLVWDPPWDPQKMSDEAKLELGML
EEEEEECCCCCCCCEEEEEECCCCCCHHCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353931; 9025291; 9384377 [H]