| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is erpA [H]
Identifier: 87198181
GI number: 87198181
Start: 154071
End: 154466
Strand: Direct
Name: erpA [H]
Synonym: Saro_0155
Alternate gene names: 87198181
Gene position: 154071-154466 (Clockwise)
Preceding gene: 87198180
Following gene: 87198182
Centisome position: 4.33
GC content: 67.68
Gene sequence:
>396_bases ATGACGAGCGGACCCGTTGAGGTTGGACGCCTGCGCGCCTATCTTGGCCCCATGAGCGAAACCGCAATCCAGACGCCCGT CACTCTCGCCCCGAGCGCCGCCGCGCGCGTTGCCGCGATTGCCGCGAAGCAGGGCAAGCCTGCCATTCTTCGACTTTCGG TCGAGGGCGGCGGCTGCTCCGGCTTCCAGTACCGGTTCGGGCTCGCGGATGCGCCGGAAGAAGGCGATACGATCGCCGAG ACGGACGGCGTGCGGCTTGTGGTCGACGAGGTCAGCCTCGGCCTGCTCGAGGGCAGCATGGTGGAATATGTCGAGTCGCT TGGCGGCGCGGCGTTCCGTGTGACCAACCCCCAGGCGGCATCGGGTTGCGGCTGCGGGGCTTCCTTCGCCATTTGA
Upstream 100 bases:
>100_bases CTCGGCATCGGGTTTGCGATGCTGTTGATGGCCGCACTGATGGGGCTGGTTTTCCTTTCGAGCGGTACCGGACACGACGA ATCCATCGAGGATCCGCTGG
Downstream 100 bases:
>100_bases CGCCCGGTCGGGCGTCGTTTCGCAGCGCCCATCCGGCACCAGCAGGAATGCCGAAAAGATGACGCTCAAGGTCGCAAGTT TCAACATCAACGGGATCAAG
Product: HesB/YadR/YfhF
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 131; Mature: 130
Protein sequence:
>131_residues MTSGPVEVGRLRAYLGPMSETAIQTPVTLAPSAAARVAAIAAKQGKPAILRLSVEGGGCSGFQYRFGLADAPEEGDTIAE TDGVRLVVDEVSLGLLEGSMVEYVESLGGAAFRVTNPQAASGCGCGASFAI
Sequences:
>Translated_131_residues MTSGPVEVGRLRAYLGPMSETAIQTPVTLAPSAAARVAAIAAKQGKPAILRLSVEGGGCSGFQYRFGLADAPEEGDTIAE TDGVRLVVDEVSLGLLEGSMVEYVESLGGAAFRVTNPQAASGCGCGASFAI >Mature_130_residues TSGPVEVGRLRAYLGPMSETAIQTPVTLAPSAAARVAAIAAKQGKPAILRLSVEGGGCSGFQYRFGLADAPEEGDTIAET DGVRLVVDEVSLGLLEGSMVEYVESLGGAAFRVTNPQAASGCGCGASFAI
Specific function: Required for insertion of 4Fe-4S clusters for at least ispG [H]
COG id: COG0316
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the hesB/iscA family [H]
Homologues:
Organism=Homo sapiens, GI160420328, Length=137, Percent_Identity=40.1459854014599, Blast_Score=87, Evalue=5e-18, Organism=Escherichia coli, GI1786351, Length=107, Percent_Identity=48.5981308411215, Blast_Score=101, Evalue=1e-23, Organism=Escherichia coli, GI1788877, Length=105, Percent_Identity=41.9047619047619, Blast_Score=87, Evalue=5e-19, Organism=Escherichia coli, GI1787974, Length=105, Percent_Identity=34.2857142857143, Blast_Score=74, Evalue=3e-15, Organism=Caenorhabditis elegans, GI71998452, Length=110, Percent_Identity=40, Blast_Score=87, Evalue=3e-18, Organism=Caenorhabditis elegans, GI193209025, Length=116, Percent_Identity=30.1724137931034, Blast_Score=67, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6323001, Length=105, Percent_Identity=33.3333333333333, Blast_Score=76, Evalue=2e-15, Organism=Drosophila melanogaster, GI24649697, Length=109, Percent_Identity=40.3669724770642, Blast_Score=76, Evalue=5e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000361 - InterPro: IPR016092 - InterPro: IPR017870 - InterPro: IPR023063 [H]
Pfam domain/function: PF01521 Fe-S_biosyn [H]
EC number: NA
Molecular weight: Translated: 13234; Mature: 13103
Theoretical pI: Translated: 4.32; Mature: 4.32
Prosite motif: PS01152 HESB
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSGPVEVGRLRAYLGPMSETAIQTPVTLAPSAAARVAAIAAKQGKPAILRLSVEGGGCS CCCCCCHHHHHHHHHCCCCCCHHCCCCEECCCHHHHHHHHHHCCCCCEEEEEEECCCCCC GFQYRFGLADAPEEGDTIAETDGVRLVVDEVSLGLLEGSMVEYVESLGGAAFRVTNPQAA CEEEEECCCCCCCCCCEEECCCCCEEEEECCCCCHHCCHHHHHHHHCCCCEEEECCCCCC SGCGCGASFAI CCCCCCCCCCC >Mature Secondary Structure TSGPVEVGRLRAYLGPMSETAIQTPVTLAPSAAARVAAIAAKQGKPAILRLSVEGGGCS CCCCCHHHHHHHHHCCCCCCHHCCCCEECCCHHHHHHHHHHCCCCCEEEEEEECCCCCC GFQYRFGLADAPEEGDTIAETDGVRLVVDEVSLGLLEGSMVEYVESLGGAAFRVTNPQAA CEEEEECCCCCCCCCCEEECCCCCEEEEECCCCCHHCCHHHHHHHHCCCCEEEECCCCCC SGCGCGASFAI CCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA