| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is yegX [C]
Identifier: 87198170
GI number: 87198170
Start: 146028
End: 146723
Strand: Direct
Name: yegX [C]
Synonym: Saro_0144
Alternate gene names: 87198170
Gene position: 146028-146723 (Clockwise)
Preceding gene: 87198169
Following gene: 87198171
Centisome position: 4.1
GC content: 66.81
Gene sequence:
>696_bases ATGGCGAAGAAACGGAACACGGTGCGTAGGCGCCTGCTCGCGGCGTTGCTGCTGGTCGTGCTCGTGGGCGCGGGCGCCGG CTGGTGGACGTCGCGCACCTGGATGCCGGACCGGACGCGCTATCCGGTCCAGGGCGTCTGGCTGAGCGACGATGATGGTA GCGTCGACTGGCGGTTTCTGCGCGCCGCAGGCGCGGATTTCGCCTACCTGACCGCCAGCGAAGGTGCCGGGACGCGGGAC AGTGTCTATGCCGCAGGCGTCGAAGCAGCCCGGTTGCGCGGACTGCAGGTAGGGCCGGTCCATGTCTACGACCTGTGTGC CCCGGCCGACGCGCAGGCCGCGAACTTCGTGACCGTGGTGCCACGCGATCCGGAGTTGCTCCCACCGGCGATTGCGCTCG ACATCGATTCGCGCACCTGCCCTGAACCTCCCGGCGAGGCGCAGATGCAGAGCGAGTTGACCACGTTCCTCAACCAGGTG GAGAAGCATGCAGAGAAGCCAGCGATCCTGATGGTGTCGCGCGGTCTGGAAAAGCAGTATCATCTTGCCGCCATGATCGA CCGCAATCTCTGGGTTTCGCAGGACTTCATCGAGCCCGGCTACGCCGGCAGGCCGTGGGTCATGTGGACAGCGACCAAGC GCCTGCGTCTGCATGGCGCAAGCGGCCCCCTGCGCTGGGTCGTCGTGCAGCCATGA
Upstream 100 bases:
>100_bases AAGATCGATACCGATTTCGCTACGGCCCGCCGCCTCTTTACCCTGATCTGCGTGCTGCATATCAGGGGCTGACAACAGGC GGGACGCGACTCTCTCTATC
Downstream 100 bases:
>100_bases GTATCGATCTTGTCGCGGAACGCCGGGAAGCGCTGGTCGCCGCTGCACGCACGGCGATGGGCACTGCCTATGCGCCCTAT TCCGGTTTCCATGTGGGCGC
Product: glycoside hydrolase family protein
Products: NA
Alternate protein names: Glycoside Hydrolase Family Protein; Lysozyme; Glycosyl Hydrolase Family; Glycosyl Hydrolase/Lysozyme; Glycosyl Transferase; Glycosy Hydrolase Family Protein; Cell-Wall Lytic; Glycosyl Hydrolases Family; Glycosyl Hydrolase Lysozyme Protein; Glycoside Hydrolase Protein; Family; Glycosyl Hydrolase; Cell-Wall Lytic Muramidase Protein; Extracellular Glycosyl Hydrolase
Number of amino acids: Translated: 231; Mature: 230
Protein sequence:
>231_residues MAKKRNTVRRRLLAALLLVVLVGAGAGWWTSRTWMPDRTRYPVQGVWLSDDDGSVDWRFLRAAGADFAYLTASEGAGTRD SVYAAGVEAARLRGLQVGPVHVYDLCAPADAQAANFVTVVPRDPELLPPAIALDIDSRTCPEPPGEAQMQSELTTFLNQV EKHAEKPAILMVSRGLEKQYHLAAMIDRNLWVSQDFIEPGYAGRPWVMWTATKRLRLHGASGPLRWVVVQP
Sequences:
>Translated_231_residues MAKKRNTVRRRLLAALLLVVLVGAGAGWWTSRTWMPDRTRYPVQGVWLSDDDGSVDWRFLRAAGADFAYLTASEGAGTRD SVYAAGVEAARLRGLQVGPVHVYDLCAPADAQAANFVTVVPRDPELLPPAIALDIDSRTCPEPPGEAQMQSELTTFLNQV EKHAEKPAILMVSRGLEKQYHLAAMIDRNLWVSQDFIEPGYAGRPWVMWTATKRLRLHGASGPLRWVVVQP >Mature_230_residues AKKRNTVRRRLLAALLLVVLVGAGAGWWTSRTWMPDRTRYPVQGVWLSDDDGSVDWRFLRAAGADFAYLTASEGAGTRDS VYAAGVEAARLRGLQVGPVHVYDLCAPADAQAANFVTVVPRDPELLPPAIALDIDSRTCPEPPGEAQMQSELTTFLNQVE KHAEKPAILMVSRGLEKQYHLAAMIDRNLWVSQDFIEPGYAGRPWVMWTATKRLRLHGASGPLRWVVVQP
Specific function: Unknown
COG id: COG3757
COG function: function code M; Lyzozyme M1 (1,4-beta-N-acetylmuramidase)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25559; Mature: 25427
Theoretical pI: Translated: 8.68; Mature: 8.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKKRNTVRRRLLAALLLVVLVGAGAGWWTSRTWMPDRTRYPVQGVWLSDDDGSVDWRFL CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEE RAAGADFAYLTASEGAGTRDSVYAAGVEAARLRGLQVGPVHVYDLCAPADAQAANFVTVV ECCCCCEEEEEECCCCCCCCCEECCCCHHHHHCCCEECCEEEEEECCCCCCCCCCEEEEE PRDPELLPPAIALDIDSRTCPEPPGEAQMQSELTTFLNQVEKHAEKPAILMVSRGLEKQY CCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHH HLAAMIDRNLWVSQDFIEPGYAGRPWVMWTATKRLRLHGASGPLRWVVVQP HEEEEECCCCEEEHHCCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEECC >Mature Secondary Structure AKKRNTVRRRLLAALLLVVLVGAGAGWWTSRTWMPDRTRYPVQGVWLSDDDGSVDWRFL CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEE RAAGADFAYLTASEGAGTRDSVYAAGVEAARLRGLQVGPVHVYDLCAPADAQAANFVTVV ECCCCCEEEEEECCCCCCCCCEECCCCHHHHHCCCEECCEEEEEECCCCCCCCCCEEEEE PRDPELLPPAIALDIDSRTCPEPPGEAQMQSELTTFLNQVEKHAEKPAILMVSRGLEKQY CCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHH HLAAMIDRNLWVSQDFIEPGYAGRPWVMWTATKRLRLHGASGPLRWVVVQP HEEEEECCCCEEEHHCCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA