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The map label for this gene is carQ [H]

Identifier: 86751766

GI number: 86751766

Start: 5281547

End: 5282158

Strand: Direct

Name: carQ [H]

Synonym: RPB_4668

Alternate gene names: 86751766

Gene position: 5281547-5282158 (Clockwise)

Preceding gene: 86751765

Following gene: 86751767

Centisome position: 99.06

GC content: 63.56

Gene sequence:

>612_bases
ATGCAGAACGTCATTGCCATCAACGACGCAGGCCGCCAGGGCATTGCTGCCGCGCAGGCCACCACAGACGATATGCTGCT
GGCCAATATTGCCGCCGGCGACCGGACTTCGATGCACACGCTTTATTCCCGTCACAACGTGCGGGTTTACCGCTTCATCC
TGCGCATGGTGCGTGACGGCGCGACGGCGGAAGATCTCGTCAGCCAGGTTTTTCTCGATGTCTGGCGCACCGCCCGGCAG
TTCGAAGGCCGTGCCCAGGTCTCGACCTGGCTGCTGTCGATCGCCCGCTTCAAGGCGCTCACCGCGCTTCGCCAGCGCCA
GCATGAAGACATCGATCAGGACGACGTGCTGGAGATTCCCGACGGCGCCGATACGCCCGAAGCCGCGCTCGACCGCAGCC
GCACCAGCGACATTCTGCGCAGCTGCATCGCCAAGCTGTCGCCGGCGCATCGCGAGATCATCCACCTCGTCTATTATCAC
GAGAAGTCGGTCGAAGAGGTCGGCCGCCTCGTCGGCATTCCGCAGAGCACGGTGAAGACCCGGATGTTCTATGCCCGCAA
ACAGCTTGCCGAACTGCTGAAGCGCCACGGCGTCGAGACCATGGCCGCCTGA

Upstream 100 bases:

>100_bases
ACCATTTTCGGCCGTTCGCGCAGACGTCCTGAAATGCGGCCTGACTAGTAAAGCTCCCAACGACGCCGCGGGGGAGCGCG
GCGGATAACGGGAGCCATTC

Downstream 100 bases:

>100_bases
TCCGGCGGCCTGATCCGGTCAGCGGCGCGGTCCGCCGCCGCCTCGGCCGAACGGCTTGTTTAGAGAAGATCTTTTTCGGC
GGAATTCACCGCCCCATTGG

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 203

Protein sequence:

>203_residues
MQNVIAINDAGRQGIAAAQATTDDMLLANIAAGDRTSMHTLYSRHNVRVYRFILRMVRDGATAEDLVSQVFLDVWRTARQ
FEGRAQVSTWLLSIARFKALTALRQRQHEDIDQDDVLEIPDGADTPEAALDRSRTSDILRSCIAKLSPAHREIIHLVYYH
EKSVEEVGRLVGIPQSTVKTRMFYARKQLAELLKRHGVETMAA

Sequences:

>Translated_203_residues
MQNVIAINDAGRQGIAAAQATTDDMLLANIAAGDRTSMHTLYSRHNVRVYRFILRMVRDGATAEDLVSQVFLDVWRTARQ
FEGRAQVSTWLLSIARFKALTALRQRQHEDIDQDDVLEIPDGADTPEAALDRSRTSDILRSCIAKLSPAHREIIHLVYYH
EKSVEEVGRLVGIPQSTVKTRMFYARKQLAELLKRHGVETMAA
>Mature_203_residues
MQNVIAINDAGRQGIAAAQATTDDMLLANIAAGDRTSMHTLYSRHNVRVYRFILRMVRDGATAEDLVSQVFLDVWRTARQ
FEGRAQVSTWLLSIARFKALTALRQRQHEDIDQDDVLEIPDGADTPEAALDRSRTSDILRSCIAKLSPAHREIIHLVYYH
EKSVEEVGRLVGIPQSTVKTRMFYARKQLAELLKRHGVETMAA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates genes for the light induced biosynthesis of carotenoids [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 22913; Mature: 22913

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNVIAINDAGRQGIAAAQATTDDMLLANIAAGDRTSMHTLYSRHNVRVYRFILRMVRDG
CCCEEEECCCCCCCHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHCC
ATAEDLVSQVFLDVWRTARQFEGRAQVSTWLLSIARFKALTALRQRQHEDIDQDDVLEIP
CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECC
DGADTPEAALDRSRTSDILRSCIAKLSPAHREIIHLVYYHEKSVEEVGRLVGIPQSTVKT
CCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
RMFYARKQLAELLKRHGVETMAA
HHHHHHHHHHHHHHHCCCHHHCC
>Mature Secondary Structure
MQNVIAINDAGRQGIAAAQATTDDMLLANIAAGDRTSMHTLYSRHNVRVYRFILRMVRDG
CCCEEEECCCCCCCHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHCC
ATAEDLVSQVFLDVWRTARQFEGRAQVSTWLLSIARFKALTALRQRQHEDIDQDDVLEIP
CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECC
DGADTPEAALDRSRTSDILRSCIAKLSPAHREIIHLVYYHEKSVEEVGRLVGIPQSTVKT
CCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
RMFYARKQLAELLKRHGVETMAA
HHHHHHHHHHHHHHHCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934835; 8052622 [H]