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The map label for this gene is hss [H]

Identifier: 86751650

GI number: 86751650

Start: 5146119

End: 5147552

Strand: Direct

Name: hss [H]

Synonym: RPB_4552

Alternate gene names: 86751650

Gene position: 5146119-5147552 (Clockwise)

Preceding gene: 86751649

Following gene: 86751658

Centisome position: 96.52

GC content: 64.92

Gene sequence:

>1434_bases
ATGTCGTCCACTTCGAAGATTCACGCCAAGATCACCGGCCCCATCGTGATGATCGGCTTCGGCTCGATCGGCAAAGGCAC
CCTGCCGTTGATCGAGCGGCACTTCGAGTACGACAAGCACCGCTTCGTCATCATCGATCCGCACGAGGACGGCGAACTGG
CGAAGAAGCACGGCGTGCGCTTCATCAGCGAGGGCGTCACCCGCGACAATTACCGCGAGCTCCTGATTCCGCTGCTCACC
GAAGGCGGCGGCCAGGGCTTCTGCGTCAACCTGTCGGTCGATACCTGCTCGGTCGACATCATGACGATGTGCCAGGAGAT
CGGCGCGCTATATATCGACACCGTGATCGAGCCCTGGCTCGGCTTCTATTTCGACAAGAGCGCGGGCCCAGAGAAGCGCT
CCAACTACGCGCTGCGCGAGACCCTGCTGGCCGCCAAGGCCAAGGCCGGCGAAGGCACCACCACCGCGGTCTCCACCTGC
GGCGCCAACCCCGGCATGGTGTCGTGGTTCGTCAAGCAGGCGCTGATCGACATCGCCCGCGACACCGGCACCGAGATCAA
CGAACCGAAGAGCCGCGACGGCTGGGCGCAGCTCGCCCACAAGCTCGGTGTCAAGGGCATCCATATCGCCGAGCGCGACA
CCCAGCGCGCCAAGAATCCGAAGCCGATGAACGTGTTCGTCAACACCTGGTCGGTCGAAGGCTTCGTCTCCGAGGGCTTG
CAGCCGGCCGAACTCGGCTGGGGCACCCACGAGACCTGGATGCCGGACAACGGCCGCACCCACAGCGAAGGCTGCGGCGC
CGCGATCTACCTGCTGCAGCCCGGCGCCAACACCCGCGTCCGCACCTGGTGCCCGACGCCGGGCGCGCAATACGGCTTCC
TGGTCACCCACAACGAGTCGATCTCGATCGCCGATTACTTCACGGTGCGCGACGGCCAGAACGTGGTGTACCGGCCGACC
TGCCACTATGCCTATCACCCGGCCAACGACGCGGTGCTGTCGCTGCACGAAATGTTCGGCGCCACCGGTAAGATGCAGCC
CAAATGGCACATCCTGGACGAGAACGAGATCGTCGACGGCATCGACGAGCTCGGCGTGCTGGTCTACGGCCACGCCAAGA
ACGCCTATTGGTACGGCTCGCAGCTGTCGATCGAAGAGACCCGCGAGATCTGCCCGTATCAGAACGCCACCGGCATGCAG
GTGTCGTCGGCGGTGCTGGCCGGCATGGTGTGGGCGCTGGAGAATCCGGAAGCCGGCATCGTCGAGGCCGACGAGATGGA
CTACAAGCGCTGCCTCGAAGTGCAGATGCCGTATCTCGGCCCCGTCAAGGGCTACTACACCGACTGGACCCCGCTGACCG
ACCGCCCCGGCCTGTTCCCCGAGGACATCGACACCTCGGACCCGTGGCAGTTCCGCAACGTGCTGGTGCGCTGA

Upstream 100 bases:

>100_bases
GGGGTGACATCCGACTTTCACCCCGCCGTCGTATTCCAGATCCGTCCCGACCGCCCCTAGCGGGTTCGCCCCGTCCACCC
CTGTCCGGAGTTCATCCCTG

Downstream 100 bases:

>100_bases
AGGCAAGACCGCCTCGGCTTCACCACAACTACACGCGCCCCTCCCCGACCGCAGCGCGCCCCCTCTCCCGCTTGCGGGAG
AGGGTTGGGGTGAGGGCGCC

Product: homospermidine synthase

Products: NA

Alternate protein names: HSS [H]

Number of amino acids: Translated: 477; Mature: 476

Protein sequence:

>477_residues
MSSTSKIHAKITGPIVMIGFGSIGKGTLPLIERHFEYDKHRFVIIDPHEDGELAKKHGVRFISEGVTRDNYRELLIPLLT
EGGGQGFCVNLSVDTCSVDIMTMCQEIGALYIDTVIEPWLGFYFDKSAGPEKRSNYALRETLLAAKAKAGEGTTTAVSTC
GANPGMVSWFVKQALIDIARDTGTEINEPKSRDGWAQLAHKLGVKGIHIAERDTQRAKNPKPMNVFVNTWSVEGFVSEGL
QPAELGWGTHETWMPDNGRTHSEGCGAAIYLLQPGANTRVRTWCPTPGAQYGFLVTHNESISIADYFTVRDGQNVVYRPT
CHYAYHPANDAVLSLHEMFGATGKMQPKWHILDENEIVDGIDELGVLVYGHAKNAYWYGSQLSIEETREICPYQNATGMQ
VSSAVLAGMVWALENPEAGIVEADEMDYKRCLEVQMPYLGPVKGYYTDWTPLTDRPGLFPEDIDTSDPWQFRNVLVR

Sequences:

>Translated_477_residues
MSSTSKIHAKITGPIVMIGFGSIGKGTLPLIERHFEYDKHRFVIIDPHEDGELAKKHGVRFISEGVTRDNYRELLIPLLT
EGGGQGFCVNLSVDTCSVDIMTMCQEIGALYIDTVIEPWLGFYFDKSAGPEKRSNYALRETLLAAKAKAGEGTTTAVSTC
GANPGMVSWFVKQALIDIARDTGTEINEPKSRDGWAQLAHKLGVKGIHIAERDTQRAKNPKPMNVFVNTWSVEGFVSEGL
QPAELGWGTHETWMPDNGRTHSEGCGAAIYLLQPGANTRVRTWCPTPGAQYGFLVTHNESISIADYFTVRDGQNVVYRPT
CHYAYHPANDAVLSLHEMFGATGKMQPKWHILDENEIVDGIDELGVLVYGHAKNAYWYGSQLSIEETREICPYQNATGMQ
VSSAVLAGMVWALENPEAGIVEADEMDYKRCLEVQMPYLGPVKGYYTDWTPLTDRPGLFPEDIDTSDPWQFRNVLVR
>Mature_476_residues
SSTSKIHAKITGPIVMIGFGSIGKGTLPLIERHFEYDKHRFVIIDPHEDGELAKKHGVRFISEGVTRDNYRELLIPLLTE
GGGQGFCVNLSVDTCSVDIMTMCQEIGALYIDTVIEPWLGFYFDKSAGPEKRSNYALRETLLAAKAKAGEGTTTAVSTCG
ANPGMVSWFVKQALIDIARDTGTEINEPKSRDGWAQLAHKLGVKGIHIAERDTQRAKNPKPMNVFVNTWSVEGFVSEGLQ
PAELGWGTHETWMPDNGRTHSEGCGAAIYLLQPGANTRVRTWCPTPGAQYGFLVTHNESISIADYFTVRDGQNVVYRPTC
HYAYHPANDAVLSLHEMFGATGKMQPKWHILDENEIVDGIDELGVLVYGHAKNAYWYGSQLSIEETREICPYQNATGMQV
SSAVLAGMVWALENPEAGIVEADEMDYKRCLEVQMPYLGPVKGYYTDWTPLTDRPGLFPEDIDTSDPWQFRNVLVR

Specific function: Involved in the NAD(+)-dependent synthesis of the polyamine homospermidine from putrescine [H]

COG id: COG5310

COG function: function code Q; Homospermidine synthase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023181
- InterPro:   IPR016040
- InterPro:   IPR005097 [H]

Pfam domain/function: PF03435 Saccharop_dh [H]

EC number: =2.5.1.44 [H]

Molecular weight: Translated: 52958; Mature: 52827

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSTSKIHAKITGPIVMIGFGSIGKGTLPLIERHFEYDKHRFVIIDPHEDGELAKKHGVR
CCCCCEEEEEEECCEEEEEECCCCCCCHHHHHHHHCCCCCEEEEECCCCCCHHHHHHCCH
FISEGVTRDNYRELLIPLLTEGGGQGFCVNLSVDTCSVDIMTMCQEIGALYIDTVIEPWL
HHHCCCCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
GFYFDKSAGPEKRSNYALRETLLAAKAKAGEGTTTAVSTCGANPGMVSWFVKQALIDIAR
HHEECCCCCCCHHCCHHHHHHHHHHHCCCCCCCCCEEHCCCCCCCHHHHHHHHHHHHHHH
DTGTEINEPKSRDGWAQLAHKLGVKGIHIAERDTQRAKNPKPMNVFVNTWSVEGFVSEGL
HCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCHHHHCCCCCCCEEEEEEEEECHHHHCCC
QPAELGWGTHETWMPDNGRTHSEGCGAAIYLLQPGANTRVRTWCPTPGAQYGFLVTHNES
CHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCEEEEEEECCC
ISIADYFTVRDGQNVVYRPTCHYAYHPANDAVLSLHEMFGATGKMQPKWHILDENEIVDG
EEEEEEEEEECCCCEEECCCCCEEECCCCHHHHHHHHHHCCCCCCCCCEEECCCCHHHHC
IDELGVLVYGHAKNAYWYGSQLSIEETREICPYQNATGMQVSSAVLAGMVWALENPEAGI
HHHCCEEEEECCCCCEEECCEECHHHHHHHCCCCCCCCCHHHHHHHHHHHEEECCCCCCE
VEADEMDYKRCLEVQMPYLGPVKGYYTDWTPLTDRPGLFPEDIDTSDPWQFRNVLVR
EECCHHCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC
>Mature Secondary Structure 
SSTSKIHAKITGPIVMIGFGSIGKGTLPLIERHFEYDKHRFVIIDPHEDGELAKKHGVR
CCCCEEEEEEECCEEEEEECCCCCCCHHHHHHHHCCCCCEEEEECCCCCCHHHHHHCCH
FISEGVTRDNYRELLIPLLTEGGGQGFCVNLSVDTCSVDIMTMCQEIGALYIDTVIEPWL
HHHCCCCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
GFYFDKSAGPEKRSNYALRETLLAAKAKAGEGTTTAVSTCGANPGMVSWFVKQALIDIAR
HHEECCCCCCCHHCCHHHHHHHHHHHCCCCCCCCCEEHCCCCCCCHHHHHHHHHHHHHHH
DTGTEINEPKSRDGWAQLAHKLGVKGIHIAERDTQRAKNPKPMNVFVNTWSVEGFVSEGL
HCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCHHHHCCCCCCCEEEEEEEEECHHHHCCC
QPAELGWGTHETWMPDNGRTHSEGCGAAIYLLQPGANTRVRTWCPTPGAQYGFLVTHNES
CHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCEEEEEEECCC
ISIADYFTVRDGQNVVYRPTCHYAYHPANDAVLSLHEMFGATGKMQPKWHILDENEIVDG
EEEEEEEEEECCCCEEECCCCCEEECCCCHHHHHHHHHHCCCCCCCCCEEECCCCHHHHC
IDELGVLVYGHAKNAYWYGSQLSIEETREICPYQNATGMQVSSAVLAGMVWALENPEAGI
HHHCCEEEEECCCCCEEECCEECHHHHHHHCCCCCCCCCHHHHHHHHHHHEEECCCCCCE
VEADEMDYKRCLEVQMPYLGPVKGYYTDWTPLTDRPGLFPEDIDTSDPWQFRNVLVR
EECCHHCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8841401 [H]