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The map label for this gene is yqxC [H]

Identifier: 86751559

GI number: 86751559

Start: 5051012

End: 5051752

Strand: Direct

Name: yqxC [H]

Synonym: RPB_4461

Alternate gene names: 86751559

Gene position: 5051012-5051752 (Clockwise)

Preceding gene: 86751558

Following gene: 86751560

Centisome position: 94.74

GC content: 69.5

Gene sequence:

>741_bases
ATGGCCAAGCCGACCGATCCATCGCCCCGCAAGCGCGCCGACGTCGTGCTGGTCGAGCGCGGCCTGTTCGAGAGCCGCGC
CCGCGCGCAGGCGGCGATCGAGGCCGGGCTGGTGTTCGCCGACGGCAAGCAAGTTACCAAGGTGTCCGAACAGATCCCGC
TCGACGCCGCGCTCGACGCGCAGCCGGCGCATCCGTGGGTGTCGCGCGGCGGGGTCAAGCTCGCCGGCGCGCTGGAGCGC
TATCCGATCGCCATCGAGGATCACGTCTGCCTCGACGTCGGCGCCTCGACCGGCGGATTCACCGAAGTACTGCTCGCCGA
CGGCGCCGCGCTGGTGTTCGCGGTCGATGTCGGCCGCGATCAGTTGCATCCGTCGCTGCGCGGCCACCCCCGGATCGTGT
CGATGGAAGCCACCGACATCCGCAGCCTGGAGGGCAAACGGCTGCCGCAGCGGCCCGACGTGGTGGTGATCGATGCCAGC
TTCATCTCGCTGAAACTGGTGCTGCCCGCCGCATTGTCGCTGGCCGCCGCGCCGATGAGCCTCCTGGCGCTGATCAAGCC
GCAATTCGAGGTGCCGTCGAAACACGGCATCGTCCGCGACGCCGAAGCGCATCGCGCGGTGATCGACGACATCACCGCCT
TCGCGGCCTCGCTCGGCTGCACCGATATCGCCGTGTTCGCCTCGCCGATCGCGGGCGGCGACGGCAATATCGAGTTCTTC
CTCGGCGCACGCAGGGGTTGA

Upstream 100 bases:

>100_bases
ACTCAACGCTCTCACGGATCATGAAGATCCACCTCGTCGCTGCCGATGTCCTGCACCTGACGCTCTGGAGATCGGCGATG
ACGTTCCCATCGGGCTGAGC

Downstream 100 bases:

>100_bases
GTTTCATATTCTTGCACGTCGTGATCCGATGGTCACGCTGCAGCCGCAAGTTGGGCTATGGTGCGCGCCATGACCTCCTC
GGATTTGCACCTCGCCGCCG

Product: hemolysin A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MAKPTDPSPRKRADVVLVERGLFESRARAQAAIEAGLVFADGKQVTKVSEQIPLDAALDAQPAHPWVSRGGVKLAGALER
YPIAIEDHVCLDVGASTGGFTEVLLADGAALVFAVDVGRDQLHPSLRGHPRIVSMEATDIRSLEGKRLPQRPDVVVIDAS
FISLKLVLPAALSLAAAPMSLLALIKPQFEVPSKHGIVRDAEAHRAVIDDITAFAASLGCTDIAVFASPIAGGDGNIEFF
LGARRG

Sequences:

>Translated_246_residues
MAKPTDPSPRKRADVVLVERGLFESRARAQAAIEAGLVFADGKQVTKVSEQIPLDAALDAQPAHPWVSRGGVKLAGALER
YPIAIEDHVCLDVGASTGGFTEVLLADGAALVFAVDVGRDQLHPSLRGHPRIVSMEATDIRSLEGKRLPQRPDVVVIDAS
FISLKLVLPAALSLAAAPMSLLALIKPQFEVPSKHGIVRDAEAHRAVIDDITAFAASLGCTDIAVFASPIAGGDGNIEFF
LGARRG
>Mature_245_residues
AKPTDPSPRKRADVVLVERGLFESRARAQAAIEAGLVFADGKQVTKVSEQIPLDAALDAQPAHPWVSRGGVKLAGALERY
PIAIEDHVCLDVGASTGGFTEVLLADGAALVFAVDVGRDQLHPSLRGHPRIVSMEATDIRSLEGKRLPQRPDVVVIDASF
ISLKLVLPAALSLAAAPMSLLALIKPQFEVPSKHGIVRDAEAHRAVIDDITAFAASLGCTDIAVFASPIAGGDGNIEFFL
GARRG

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 25919; Mature: 25788

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKPTDPSPRKRADVVLVERGLFESRARAQAAIEAGLVFADGKQVTKVSEQIPLDAALDA
CCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCEEEECCCHHHHHHHHCCCCCCCCC
QPAHPWVSRGGVKLAGALERYPIAIEDHVCLDVGASTGGFTEVLLADGAALVFAVDVGRD
CCCCCHHHCCCEEEECHHHHCCEEECCCEEEEECCCCCCCEEEEEECCCEEEEEEECCHH
QLHPSLRGHPRIVSMEATDIRSLEGKRLPQRPDVVVIDASFISLKLVLPAALSLAAAPMS
HCCCCCCCCCEEEEEEHHHHHHCCCCCCCCCCCEEEEECCCEEEEHHHHHHHHHHHHHHH
LLALIKPQFEVPSKHGIVRDAEAHRAVIDDITAFAASLGCTDIAVFASPIAGGDGNIEFF
HHHHHCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCHHEEEHHCCCCCCCCCEEEE
LGARRG
EECCCC
>Mature Secondary Structure 
AKPTDPSPRKRADVVLVERGLFESRARAQAAIEAGLVFADGKQVTKVSEQIPLDAALDA
CCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCEEEECCCHHHHHHHHCCCCCCCCC
QPAHPWVSRGGVKLAGALERYPIAIEDHVCLDVGASTGGFTEVLLADGAALVFAVDVGRD
CCCCCHHHCCCEEEECHHHHCCEEECCCEEEEECCCCCCCEEEEEECCCEEEEEEECCHH
QLHPSLRGHPRIVSMEATDIRSLEGKRLPQRPDVVVIDASFISLKLVLPAALSLAAAPMS
HCCCCCCCCCEEEEEEHHHHHHCCCCCCCCCCCEEEEECCCEEEEHHHHHHHHHHHHHHH
LLALIKPQFEVPSKHGIVRDAEAHRAVIDDITAFAASLGCTDIAVFASPIAGGDGNIEFF
HHHHHCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCHHEEEHHCCCCCCCCCEEEE
LGARRG
EECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]