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The map label for this gene is bphB [H]

Identifier: 86751549

GI number: 86751549

Start: 5037119

End: 5039446

Strand: Direct

Name: bphB [H]

Synonym: RPB_4451

Alternate gene names: 86751549

Gene position: 5037119-5039446 (Clockwise)

Preceding gene: 86751548

Following gene: 86751550

Centisome position: 94.48

GC content: 63.96

Gene sequence:

>2328_bases
ATGAACGAACCGCAACCACCGACGACCGCGCCAGACGCATCCTCCCAGGTGCGGGATGAATTTGCGTTGGCTGCCGATCT
CACCGAATGCGATCGGGAGCCGATCCACATTCCCGGTTCGATCCAGCCTCACGGCGTTCTGATCGCTCTCGCCGAACCTG
ATCTGCGACCCGTCTCGGTCAGCGCCAACATCGAAGCGGTGCTCGGACTATCGCCGGAGGCCGTGCTGGCGGAGCCGTTG
TCGGCGCATCTGTCGGCCGACAGCGCCAGCCTGCTCCGCGATGCGCTGTCCGGCGACCTCGCCGCGGCCAATCCACTTCA
CGTCGAATTCCTGACCAGTTCGGGCACCCGGACCTTCAACGGCATTCTGCATCGTCACGATAGTCTCTGCATCCTGGAGT
TGGAGCCGCGCGACACCACCGAATCGTCCAGCGAATTCTTCCGAAGCGTTCGCGCTGCAATCAGGCGGCTGCAGAAGGCG
ACCAGCGTGCTGATGGCCTGCGACATCGCGGCCCGCGAAGTGCGCCGGATCACCGGTTTCGACCGCATCAAGATCTATCG
ATTTTCGGCCGATTGGAGCGGACAGGTGATCGCCGAAGATCGTATCGACAGCATTCCATCGCTGCTGGATTTCCACTTTC
CGGCCTCTGATATTCCGGCGCAGTCGCGCGCGCTGTACACCAGCAACACCGTCCGGATCATTCCGGATATCGGCTATCGC
CCGTCTCCATTGTTGCCGGACCGCAATCCGGTGACCGGCGGTCCGATCGATCTCAGCTATTCGGTGCTGCGCAGCGTCTC
GCCGATCCACGTCGAATACATGGTCAACATGGCGGTGTACGGGGCGATGTCGGTGTCGATCGTGCGCGAGGGCCGCCTCT
GGGGCATGATCTCGTGCCACAACACCTCGCCCCGTTTCGTCGCCTACGAGATCCGTCAGGCCTGTGAACTGATCGCGCAG
GTGTTGACCTGGCAGATCAGCGTGCTCGAGGAAGCCGAGATCGTCCATCACAGCGTCCAGGTGCGCGCCACGCAGAACAA
GCTGCTGCACCAGTTCGGCGACGAGCAGAGCCTCCACGGAGGGCTGAGCCGGATCGGGGACGAACTGCTCGCATTGATGA
GCGCCTCCGGATTTGCGCTGTGCGGATTCGACAACATCACGTCGTTCGGGCAGACCCCGTCGCCGGTGCAACTGCGCGAC
CTCGCGCGCTGGATCAACTGCACCCAGCCCAACGGCGTATTCGAGACCGACCGCCTCGCGGCAATCTACGACGAGGCCGC
GACTTACAGCGATATCACCAGCGGCGTGCTCGGCATCCCGCTCGGACGGGCATCGACAACCCTGTTGTTGTGGTTCCGGC
CGGAAGTCGCGCAGACGGTGACGTGGGGCGGCGATCCGCACAAGCCGGTGCGGATCGGCCCGCACGGTCGACGGCTGCAA
ACCCGAGCGTCGTTCGACGCCTGGCGCGAGGAGGTGCGCGGCCGCTCGATTCCGTGGCGCAGCCACGAGATCGCTGCGGC
CGTCGAAATCCGTGACCTGGTCGTCGATGTCATTCTCGGCAAGGCGGAGCAATTGGAGAGCGCGAACCGAGAACTCTCGC
GCAGCAATGACGAGCTGGAATCCTTCGCCTATGTCGCCGCTCACGATCTCAAGGAACCGCTGCGGCACATCGAGGCGTTC
GCCGGTCTGTTGAGCGATCTGCTCGCCCCTGAGGCCAAGGCCAAACTCAACGTCATGGTCAGCGGCATCGAAGCCTCGTC
GCGGCGCCTGCGAGCGCTGATCAACGACCTCGCCGAATATTCGCGGGTCGGACGGCAGGCACGTCCACTGGCCCCGATCT
CGCTGAACGAGGTTTTGTCCGAAGTCCTCGCCGATCTGAAGCCGATTCTGCAGGACACCCGCGCGGCGGTGACGGCCGGC
GATCTTCCCGTCGTGCTGTGCGATGCCAGCCAGATCCGCCAGTTGTTGCAGAACCTGATCTCCAACGCGCTCAAATATCG
CGACAACGGCCGCGCGCCGCAAATCACGATCGGCTCGGTGGTCGAGAACGAATCCACCGGCAGCGAAAGTGTTCGCCGGC
TGCGCGTCAGCATCGCCGACAACGGCATCGGCTTCGACCCGAAATACGTCGAACAGATCTTCGAGCCGTTTCAGCGCCTG
CACGGTCCGGACGAATACGAGGGAACCGGCATCGGGCTGGCGATCTGCCGCAAGATCGTCAGCCGCCATGGTGGGTCGAT
CACGGCCACCAGCCGGCCCGGCGAGGGCTCGGTGTTCGACTTCACACTGCCTTTGCGCGGCGCGGATGATGCGGAGCGGC
CGTCATGA

Upstream 100 bases:

>100_bases
CAGGTCGGCGTCGACACGATCCCCGGTTCTGGCTCCACCTTCTGGTTCACGCTGCCGATTGCGGTCGCCCTGTCGGCCAC
GCCTTGAACCGGACACCGCG

Downstream 100 bases:

>100_bases
ACCGGGATCCGATTTTGCCGACGGTGCTGGTCGCCGAGGACCACGACTACGACAAGCTGATCCTGACCGAAGTGTTCGGT
CGAGCCGGCATCAAGGCGGA

Product: multi-sensor signal transduction histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 775; Mature: 775

Protein sequence:

>775_residues
MNEPQPPTTAPDASSQVRDEFALAADLTECDREPIHIPGSIQPHGVLIALAEPDLRPVSVSANIEAVLGLSPEAVLAEPL
SAHLSADSASLLRDALSGDLAAANPLHVEFLTSSGTRTFNGILHRHDSLCILELEPRDTTESSSEFFRSVRAAIRRLQKA
TSVLMACDIAAREVRRITGFDRIKIYRFSADWSGQVIAEDRIDSIPSLLDFHFPASDIPAQSRALYTSNTVRIIPDIGYR
PSPLLPDRNPVTGGPIDLSYSVLRSVSPIHVEYMVNMAVYGAMSVSIVREGRLWGMISCHNTSPRFVAYEIRQACELIAQ
VLTWQISVLEEAEIVHHSVQVRATQNKLLHQFGDEQSLHGGLSRIGDELLALMSASGFALCGFDNITSFGQTPSPVQLRD
LARWINCTQPNGVFETDRLAAIYDEAATYSDITSGVLGIPLGRASTTLLLWFRPEVAQTVTWGGDPHKPVRIGPHGRRLQ
TRASFDAWREEVRGRSIPWRSHEIAAAVEIRDLVVDVILGKAEQLESANRELSRSNDELESFAYVAAHDLKEPLRHIEAF
AGLLSDLLAPEAKAKLNVMVSGIEASSRRLRALINDLAEYSRVGRQARPLAPISLNEVLSEVLADLKPILQDTRAAVTAG
DLPVVLCDASQIRQLLQNLISNALKYRDNGRAPQITIGSVVENESTGSESVRRLRVSIADNGIGFDPKYVEQIFEPFQRL
HGPDEYEGTGIGLAICRKIVSRHGGSITATSRPGEGSVFDFTLPLRGADDAERPS

Sequences:

>Translated_775_residues
MNEPQPPTTAPDASSQVRDEFALAADLTECDREPIHIPGSIQPHGVLIALAEPDLRPVSVSANIEAVLGLSPEAVLAEPL
SAHLSADSASLLRDALSGDLAAANPLHVEFLTSSGTRTFNGILHRHDSLCILELEPRDTTESSSEFFRSVRAAIRRLQKA
TSVLMACDIAAREVRRITGFDRIKIYRFSADWSGQVIAEDRIDSIPSLLDFHFPASDIPAQSRALYTSNTVRIIPDIGYR
PSPLLPDRNPVTGGPIDLSYSVLRSVSPIHVEYMVNMAVYGAMSVSIVREGRLWGMISCHNTSPRFVAYEIRQACELIAQ
VLTWQISVLEEAEIVHHSVQVRATQNKLLHQFGDEQSLHGGLSRIGDELLALMSASGFALCGFDNITSFGQTPSPVQLRD
LARWINCTQPNGVFETDRLAAIYDEAATYSDITSGVLGIPLGRASTTLLLWFRPEVAQTVTWGGDPHKPVRIGPHGRRLQ
TRASFDAWREEVRGRSIPWRSHEIAAAVEIRDLVVDVILGKAEQLESANRELSRSNDELESFAYVAAHDLKEPLRHIEAF
AGLLSDLLAPEAKAKLNVMVSGIEASSRRLRALINDLAEYSRVGRQARPLAPISLNEVLSEVLADLKPILQDTRAAVTAG
DLPVVLCDASQIRQLLQNLISNALKYRDNGRAPQITIGSVVENESTGSESVRRLRVSIADNGIGFDPKYVEQIFEPFQRL
HGPDEYEGTGIGLAICRKIVSRHGGSITATSRPGEGSVFDFTLPLRGADDAERPS
>Mature_775_residues
MNEPQPPTTAPDASSQVRDEFALAADLTECDREPIHIPGSIQPHGVLIALAEPDLRPVSVSANIEAVLGLSPEAVLAEPL
SAHLSADSASLLRDALSGDLAAANPLHVEFLTSSGTRTFNGILHRHDSLCILELEPRDTTESSSEFFRSVRAAIRRLQKA
TSVLMACDIAAREVRRITGFDRIKIYRFSADWSGQVIAEDRIDSIPSLLDFHFPASDIPAQSRALYTSNTVRIIPDIGYR
PSPLLPDRNPVTGGPIDLSYSVLRSVSPIHVEYMVNMAVYGAMSVSIVREGRLWGMISCHNTSPRFVAYEIRQACELIAQ
VLTWQISVLEEAEIVHHSVQVRATQNKLLHQFGDEQSLHGGLSRIGDELLALMSASGFALCGFDNITSFGQTPSPVQLRD
LARWINCTQPNGVFETDRLAAIYDEAATYSDITSGVLGIPLGRASTTLLLWFRPEVAQTVTWGGDPHKPVRIGPHGRRLQ
TRASFDAWREEVRGRSIPWRSHEIAAAVEIRDLVVDVILGKAEQLESANRELSRSNDELESFAYVAAHDLKEPLRHIEAF
AGLLSDLLAPEAKAKLNVMVSGIEASSRRLRALINDLAEYSRVGRQARPLAPISLNEVLSEVLADLKPILQDTRAAVTAG
DLPVVLCDASQIRQLLQNLISNALKYRDNGRAPQITIGSVVENESTGSESVRRLRVSIADNGIGFDPKYVEQIFEPFQRL
HGPDEYEGTGIGLAICRKIVSRHGGSITATSRPGEGSVFDFTLPLRGADDAERPS

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG4251

COG function: function code T; Bacteriophytochrome (light-regulated signal transduction histidine kinase)

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI145693157, Length=280, Percent_Identity=27.8571428571429, Blast_Score=99, Evalue=1e-21,
Organism=Escherichia coli, GI87081816, Length=449, Percent_Identity=26.7260579064588, Blast_Score=99, Evalue=1e-21,
Organism=Escherichia coli, GI1786912, Length=252, Percent_Identity=32.5396825396825, Blast_Score=96, Evalue=1e-20,
Organism=Escherichia coli, GI1789149, Length=264, Percent_Identity=30.6818181818182, Blast_Score=95, Evalue=2e-20,
Organism=Escherichia coli, GI48994928, Length=303, Percent_Identity=29.042904290429, Blast_Score=90, Evalue=6e-19,
Organism=Escherichia coli, GI1790436, Length=241, Percent_Identity=28.2157676348548, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1788713, Length=234, Percent_Identity=24.3589743589744, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI1788393, Length=258, Percent_Identity=27.1317829457364, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1788549, Length=249, Percent_Identity=26.1044176706827, Blast_Score=70, Evalue=5e-13,
Organism=Escherichia coli, GI1790346, Length=227, Percent_Identity=27.7533039647577, Blast_Score=70, Evalue=6e-13,
Organism=Escherichia coli, GI1789808, Length=201, Percent_Identity=27.363184079602, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1787894, Length=227, Percent_Identity=30.3964757709251, Blast_Score=67, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 84817; Mature: 84817

Theoretical pI: Translated: 5.44; Mature: 5.44

Prosite motif: PS50109 HIS_KIN ; PS50046 PHYTOCHROME_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEPQPPTTAPDASSQVRDEFALAADLTECDREPIHIPGSIQPHGVLIALAEPDLRPVSV
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCEEEEEECCCCCEEEE
SANIEAVLGLSPEAVLAEPLSAHLSADSASLLRDALSGDLAAANPLHVEFLTSSGTRTFN
CCCCEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHH
GILHRHDSLCILELEPRDTTESSSEFFRSVRAAIRRLQKATSVLMACDIAAREVRRITGF
HHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DRIKIYRFSADWSGQVIAEDRIDSIPSLLDFHFPASDIPAQSRALYTSNTVRIIPDIGYR
CEEEEEEEECCCCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCEEEEECCCCC
PSPLLPDRNPVTGGPIDLSYSVLRSVSPIHVEYMVNMAVYGAMSVSIVREGRLWGMISCH
CCCCCCCCCCCCCCCCCCHHHHHHCCCCEEHHHHHHHHHHHHHEEEEEECCCEEEEEEEC
NTSPRFVAYEIRQACELIAQVLTWQISVLEEAEIVHHSVQVRATQNKLLHQFGDEQSLHG
CCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHCCCCHHHHH
GLSRIGDELLALMSASGFALCGFDNITSFGQTPSPVQLRDLARWINCTQPNGVFETDRLA
HHHHHHHHHHHHHCCCCCEEECCCCHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHH
AIYDEAATYSDITSGVLGIPLGRASTTLLLWFRPEVAQTVTWGGDPHKPVRIGPHGRRLQ
HHHHHHHHHHHHHCCHHCCCCCCCCEEEEEEECCCHHHEEECCCCCCCCEEECCCCCCCH
TRASFDAWREEVRGRSIPWRSHEIAAAVEIRDLVVDVILGKAEQLESANRELSRSNDELE
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHH
SFAYVAAHDLKEPLRHIEAFAGLLSDLLAPEAKAKLNVMVSGIEASSRRLRALINDLAEY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
SRVGRQARPLAPISLNEVLSEVLADLKPILQDTRAAVTAGDLPVVLCDASQIRQLLQNLI
HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEECHHHHHHHHHHHH
SNALKYRDNGRAPQITIGSVVENESTGSESVRRLRVSIADNGIGFDPKYVEQIFEPFQRL
HHHHHHCCCCCCCEEEECCHHCCCCCCHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHHH
HGPDEYEGTGIGLAICRKIVSRHGGSITATSRPGEGSVFDFTLPLRGADDAERPS
CCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEECCCCCCCCCCCC
>Mature Secondary Structure
MNEPQPPTTAPDASSQVRDEFALAADLTECDREPIHIPGSIQPHGVLIALAEPDLRPVSV
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCEEEEEECCCCCEEEE
SANIEAVLGLSPEAVLAEPLSAHLSADSASLLRDALSGDLAAANPLHVEFLTSSGTRTFN
CCCCEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHH
GILHRHDSLCILELEPRDTTESSSEFFRSVRAAIRRLQKATSVLMACDIAAREVRRITGF
HHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DRIKIYRFSADWSGQVIAEDRIDSIPSLLDFHFPASDIPAQSRALYTSNTVRIIPDIGYR
CEEEEEEEECCCCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCEEEEECCCCC
PSPLLPDRNPVTGGPIDLSYSVLRSVSPIHVEYMVNMAVYGAMSVSIVREGRLWGMISCH
CCCCCCCCCCCCCCCCCCHHHHHHCCCCEEHHHHHHHHHHHHHEEEEEECCCEEEEEEEC
NTSPRFVAYEIRQACELIAQVLTWQISVLEEAEIVHHSVQVRATQNKLLHQFGDEQSLHG
CCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHCCCCHHHHH
GLSRIGDELLALMSASGFALCGFDNITSFGQTPSPVQLRDLARWINCTQPNGVFETDRLA
HHHHHHHHHHHHHCCCCCEEECCCCHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHH
AIYDEAATYSDITSGVLGIPLGRASTTLLLWFRPEVAQTVTWGGDPHKPVRIGPHGRRLQ
HHHHHHHHHHHHHCCHHCCCCCCCCEEEEEEECCCHHHEEECCCCCCCCEEECCCCCCCH
TRASFDAWREEVRGRSIPWRSHEIAAAVEIRDLVVDVILGKAEQLESANRELSRSNDELE
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHH
SFAYVAAHDLKEPLRHIEAFAGLLSDLLAPEAKAKLNVMVSGIEASSRRLRALINDLAEY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
SRVGRQARPLAPISLNEVLSEVLADLKPILQDTRAAVTAGDLPVVLCDASQIRQLLQNLI
HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEECHHHHHHHHHHHH
SNALKYRDNGRAPQITIGSVVENESTGSESVRRLRVSIADNGIGFDPKYVEQIFEPFQRL
HHHHHHCCCCCCCEEEECCHHCCCCCCHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHHH
HGPDEYEGTGIGLAICRKIVSRHGGSITATSRPGEGSVFDFTLPLRGADDAERPS
CCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]