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The map label for this gene is bphB [H]

Identifier: 86751548

GI number: 86751548

Start: 5034829

End: 5037105

Strand: Direct

Name: bphB [H]

Synonym: RPB_4450

Alternate gene names: 86751548

Gene position: 5034829-5037105 (Clockwise)

Preceding gene: 86751547

Following gene: 86751549

Centisome position: 94.43

GC content: 65.83

Gene sequence:

>2277_bases
ATGAATTCGGCTGCCGGTGACGTCGACCTGACGAACTGTGACCGCGAGCCGATACACATTCCCGGGTCCATCCAGCCGCA
TGGACTATTGATCGCGTTCAACGATGATCTGCGGGCGGTTGCCGTCAGTTCCAACATCGCGACCTTCGCCGACCTCGGCC
CGGACGATCTGCTCGGCAGATCGCTCGCCGAGGCACTCGACGCCGACAGCCAGGCGCGGCTCCGCAGCGCCATGCGTGAG
CCGGTCGATGCCAGCGGTTCGCCGGTCGCCATCCGGCTGCGCCGGCGCGACGCCGAGTTCACCGGCCTCTGGCATCGCCA
CGGCGGGTTGACGTTTCTCGAACTCGAAGTACCACGGCACGAGGCGGCGGAGTCGCACGCGTTCTTCTGCCGGACCAGCG
GCGCGATCAAGCGCCTGCAGGCGGCGCAGAGCCTGGAAGGCGCCTGCAGCGCTGCGGCGCGCGAAGTGCGCGAGATCACC
GAATTCGATCGGGTCAAGATCTACCGCTTCGCGCCCGACTTCAGCGGCGAAGTGATCGCGGAGGACCGTACCGAAGGCGT
CGAGTCGTTTCTCGGGCTGCACTTTCCGCCGTCGGATATCCCGGCGCAGGCGCGCAGGCTCTACGCCACCAATCCGATCC
GGATCATTCCCGATATCGACTACATCCCCGTTCCGATCGTGCCCGGCCACGATCCGTCCACCGGGCAGGCGATCGATCTG
AGTTTTGCCGTGCTGCGGAGCGTTTCGCCGATCCATCTCGAATATATGCGCAATATCGGCATGCGCGGCACGATGTCGGT
CTCGATCCTCCGCGGCGACAAGCTGTGGGGGCTGATCGCGTGCCACAACCGGCAGCCGCGCTACGTCGGCCACGACGCTC
GCCAGGCTTGCGACATGGTCGCACAGGTGCTGGCATGGCAGGTCGGCGTGATGGAGGAGCAGGCTGCGACCCGCCAGACC
CTGAAGGGAAAGGCGATCCAGCGCAGCCTGATCAGCGACATCGAACAATTGCACGACCATCGCGCGGGTCTGGTGCGCAA
CAGCGAAGCCCTGCTCGAATTGATGGGGGCGTCCGGCCTGTGCCTGTTCGGACGCGAAGGCATCACCTCGATCGGCCGCA
CGCCACCCGAAGCGGCGATCGAGATGCTGGCCGGTCTGGTCGGGCGCAATGACAGCGCCGAGCTGTTCGCGACCGATCAG
CTGTCCACCCTGTTTCCGGAGGCCAAAGCCTTCGCCGACGTCGCCAGCGGGGTGCTCGCCGTTCCGCTGTCGCGCACGAC
GCCGCGGCGGGTGATGCTGTGGTTTCGCCCGGAAGTGTCGCAGACCGTCTATTGGGCCGGCAATCCCGACAAATCGGTCA
GGGCGGAGTCCGGGCGATTGCGGCCACGGACATCGTTCGTCGCCTGGACCGAGGAAACCAGCGGGCGCGCGTTGCCCTGG
CAGCCGCATGAAATCGCGGCCGCGGTCGAGATCAGGGATCTGGTCATCGACGTGATCCTGCGCAACACCGAGAAGCTCGA
ACGCGTGAACACTCAGCTCGCGCGCAGCAATGAAGAACTCGAGGCTTTCGCCAACGTGGCCTCGCACGACATCAAGGAGC
CTCTGCGTCACATCGAGGCCTTCGCCGGACTGCTCGGCGAGTCGATCCGCGAGATGGGCGACGAGCGCCTCGGCCTGATG
GTCAGCGGCATCGAAAAGTCGTCGCAGCGGCTGCGCATTCTGATCAACGACCTCGCCGAATTCTCGCAGCTCGGCCGCCG
CTCCAAGCCGCTCGCACAGACGTCTTTGATGGAAGTCGCCCAGGACGTCGCCACCGATCTGCATCAGCGGATCGAAGAGG
CGGCGGCGGTCGTGGGGATCGAACAGCTCCCGGTCGCGCAATGCGATCGCAACCAGATGCGGCAGGTTCTACAGAATCTG
TTGTCGAACGCATTGAAGTATCGGCATCCCGGCCGACCCTGCCGAATTCGCGTGTACGCCGAGCAGCGCAGCGCGGAGGA
GCCTCGCGGGGAGGTCGGCAGGGCGGCCGCCTCCACACGGATCTGCGTCAGCGACAACGGCATCGGCTTCGACCCGAAAT
ACGCCGAGCAGATCTTCGAGCCGTTTCAGCGTCTCCATGGCCCCGACGACTACGAGGGCAGCGGCATCGGGCTCGCGATC
TGCCGCAAGATCGTGCAGCGGCACGGAGGCCAGGTCGGCGTCGACACGATCCCCGGTTCTGGCTCCACCTTCTGGTTCAC
GCTGCCGATTGCGGTCGCCCTGTCGGCCACGCCTTGA

Upstream 100 bases:

>100_bases
CAAGGCTTGCTTCATCGTTCCAAGGACCCGGCCGCGCCCGCGGTCGCGGCCGATTCTCGAGATCGGTCGATCCGGACCAG
CAAGTGCACGTGAGTTGGGC

Downstream 100 bases:

>100_bases
ACCGGACACCGCGATGAACGAACCGCAACCACCGACGACCGCGCCAGACGCATCCTCCCAGGTGCGGGATGAATTTGCGT
TGGCTGCCGATCTCACCGAA

Product: multi-sensor signal transduction histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 758; Mature: 758

Protein sequence:

>758_residues
MNSAAGDVDLTNCDREPIHIPGSIQPHGLLIAFNDDLRAVAVSSNIATFADLGPDDLLGRSLAEALDADSQARLRSAMRE
PVDASGSPVAIRLRRRDAEFTGLWHRHGGLTFLELEVPRHEAAESHAFFCRTSGAIKRLQAAQSLEGACSAAAREVREIT
EFDRVKIYRFAPDFSGEVIAEDRTEGVESFLGLHFPPSDIPAQARRLYATNPIRIIPDIDYIPVPIVPGHDPSTGQAIDL
SFAVLRSVSPIHLEYMRNIGMRGTMSVSILRGDKLWGLIACHNRQPRYVGHDARQACDMVAQVLAWQVGVMEEQAATRQT
LKGKAIQRSLISDIEQLHDHRAGLVRNSEALLELMGASGLCLFGREGITSIGRTPPEAAIEMLAGLVGRNDSAELFATDQ
LSTLFPEAKAFADVASGVLAVPLSRTTPRRVMLWFRPEVSQTVYWAGNPDKSVRAESGRLRPRTSFVAWTEETSGRALPW
QPHEIAAAVEIRDLVIDVILRNTEKLERVNTQLARSNEELEAFANVASHDIKEPLRHIEAFAGLLGESIREMGDERLGLM
VSGIEKSSQRLRILINDLAEFSQLGRRSKPLAQTSLMEVAQDVATDLHQRIEEAAAVVGIEQLPVAQCDRNQMRQVLQNL
LSNALKYRHPGRPCRIRVYAEQRSAEEPRGEVGRAAASTRICVSDNGIGFDPKYAEQIFEPFQRLHGPDDYEGSGIGLAI
CRKIVQRHGGQVGVDTIPGSGSTFWFTLPIAVALSATP

Sequences:

>Translated_758_residues
MNSAAGDVDLTNCDREPIHIPGSIQPHGLLIAFNDDLRAVAVSSNIATFADLGPDDLLGRSLAEALDADSQARLRSAMRE
PVDASGSPVAIRLRRRDAEFTGLWHRHGGLTFLELEVPRHEAAESHAFFCRTSGAIKRLQAAQSLEGACSAAAREVREIT
EFDRVKIYRFAPDFSGEVIAEDRTEGVESFLGLHFPPSDIPAQARRLYATNPIRIIPDIDYIPVPIVPGHDPSTGQAIDL
SFAVLRSVSPIHLEYMRNIGMRGTMSVSILRGDKLWGLIACHNRQPRYVGHDARQACDMVAQVLAWQVGVMEEQAATRQT
LKGKAIQRSLISDIEQLHDHRAGLVRNSEALLELMGASGLCLFGREGITSIGRTPPEAAIEMLAGLVGRNDSAELFATDQ
LSTLFPEAKAFADVASGVLAVPLSRTTPRRVMLWFRPEVSQTVYWAGNPDKSVRAESGRLRPRTSFVAWTEETSGRALPW
QPHEIAAAVEIRDLVIDVILRNTEKLERVNTQLARSNEELEAFANVASHDIKEPLRHIEAFAGLLGESIREMGDERLGLM
VSGIEKSSQRLRILINDLAEFSQLGRRSKPLAQTSLMEVAQDVATDLHQRIEEAAAVVGIEQLPVAQCDRNQMRQVLQNL
LSNALKYRHPGRPCRIRVYAEQRSAEEPRGEVGRAAASTRICVSDNGIGFDPKYAEQIFEPFQRLHGPDDYEGSGIGLAI
CRKIVQRHGGQVGVDTIPGSGSTFWFTLPIAVALSATP
>Mature_758_residues
MNSAAGDVDLTNCDREPIHIPGSIQPHGLLIAFNDDLRAVAVSSNIATFADLGPDDLLGRSLAEALDADSQARLRSAMRE
PVDASGSPVAIRLRRRDAEFTGLWHRHGGLTFLELEVPRHEAAESHAFFCRTSGAIKRLQAAQSLEGACSAAAREVREIT
EFDRVKIYRFAPDFSGEVIAEDRTEGVESFLGLHFPPSDIPAQARRLYATNPIRIIPDIDYIPVPIVPGHDPSTGQAIDL
SFAVLRSVSPIHLEYMRNIGMRGTMSVSILRGDKLWGLIACHNRQPRYVGHDARQACDMVAQVLAWQVGVMEEQAATRQT
LKGKAIQRSLISDIEQLHDHRAGLVRNSEALLELMGASGLCLFGREGITSIGRTPPEAAIEMLAGLVGRNDSAELFATDQ
LSTLFPEAKAFADVASGVLAVPLSRTTPRRVMLWFRPEVSQTVYWAGNPDKSVRAESGRLRPRTSFVAWTEETSGRALPW
QPHEIAAAVEIRDLVIDVILRNTEKLERVNTQLARSNEELEAFANVASHDIKEPLRHIEAFAGLLGESIREMGDERLGLM
VSGIEKSSQRLRILINDLAEFSQLGRRSKPLAQTSLMEVAQDVATDLHQRIEEAAAVVGIEQLPVAQCDRNQMRQVLQNL
LSNALKYRHPGRPCRIRVYAEQRSAEEPRGEVGRAAASTRICVSDNGIGFDPKYAEQIFEPFQRLHGPDDYEGSGIGLAI
CRKIVQRHGGQVGVDTIPGSGSTFWFTLPIAVALSATP

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG4251

COG function: function code T; Bacteriophytochrome (light-regulated signal transduction histidine kinase)

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI87081816, Length=260, Percent_Identity=28.0769230769231, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1789149, Length=277, Percent_Identity=25.6317689530686, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI145693157, Length=255, Percent_Identity=26.6666666666667, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI1788549, Length=236, Percent_Identity=28.3898305084746, Blast_Score=76, Evalue=9e-15,
Organism=Escherichia coli, GI1790436, Length=244, Percent_Identity=27.8688524590164, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1788713, Length=272, Percent_Identity=23.8970588235294, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI48994928, Length=261, Percent_Identity=25.2873563218391, Blast_Score=73, Evalue=8e-14,
Organism=Escherichia coli, GI1786912, Length=259, Percent_Identity=27.027027027027, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI1790346, Length=232, Percent_Identity=28.0172413793103, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI1787894, Length=211, Percent_Identity=28.436018957346, Blast_Score=66, Evalue=1e-11,
Organism=Escherichia coli, GI1788393, Length=262, Percent_Identity=22.5190839694656, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1786600, Length=237, Percent_Identity=24.8945147679325, Blast_Score=63, Evalue=8e-11,
Organism=Escherichia coli, GI1790300, Length=255, Percent_Identity=29.4117647058824, Blast_Score=63, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 83284; Mature: 83284

Theoretical pI: Translated: 6.19; Mature: 6.19

Prosite motif: PS50109 HIS_KIN ; PS50046 PHYTOCHROME_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSAAGDVDLTNCDREPIHIPGSIQPHGLLIAFNDDLRAVAVSSNIATFADLGPDDLLGR
CCCCCCCCEECCCCCCCEECCCCCCCCEEEEEECCCCEEEEECCCCHHHHCCCHHHHHHH
SLAEALDADSQARLRSAMREPVDASGSPVAIRLRRRDAEFTGLWHRHGGLTFLELEVPRH
HHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHEEEEECCCCEEEEEECCCH
EAAESHAFFCRTSGAIKRLQAAQSLEGACSAAAREVREITEFDRVKIYRFAPDFSGEVIA
HHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCEEE
EDRTEGVESFLGLHFPPSDIPAQARRLYATNPIRIIPDIDYIPVPIVPGHDPSTGQAIDL
CCHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEH
SFAVLRSVSPIHLEYMRNIGMRGTMSVSILRGDKLWGLIACHNRQPRYVGHDARQACDMV
HHHHHHCCCHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCHHHHHHHHH
AQVLAWQVGVMEEQAATRQTLKGKAIQRSLISDIEQLHDHRAGLVRNSEALLELMGASGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCE
CLFGREGITSIGRTPPEAAIEMLAGLVGRNDSAELFATDQLSTLFPEAKAFADVASGVLA
EEECCCCHHHCCCCCHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHCCEEE
VPLSRTTPRRVMLWFRPEVSQTVYWAGNPDKSVRAESGRLRPRTSFVAWTEETSGRALPW
ECCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC
QPHEIAAAVEIRDLVIDVILRNTEKLERVNTQLARSNEELEAFANVASHDIKEPLRHIEA
CCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
FAGLLGESIREMGDERLGLMVSGIEKSSQRLRILINDLAEFSQLGRRSKPLAQTSLMEVA
HHHHHHHHHHHHCHHHHHHHEECHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
QDVATDLHQRIEEAAAVVGIEQLPVAQCDRNQMRQVLQNLLSNALKYRHPGRPCRIRVYA
HHHHHHHHHHHHHHHHHHCHHHCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
EQRSAEEPRGEVGRAAASTRICVSDNGIGFDPKYAEQIFEPFQRLHGPDDYEGSGIGLAI
CCCCCCCCCHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
CRKIVQRHGGQVGVDTIPGSGSTFWFTLPIAVALSATP
HHHHHHHCCCEECCEECCCCCCEEEEEEEEEEEEECCC
>Mature Secondary Structure
MNSAAGDVDLTNCDREPIHIPGSIQPHGLLIAFNDDLRAVAVSSNIATFADLGPDDLLGR
CCCCCCCCEECCCCCCCEECCCCCCCCEEEEEECCCCEEEEECCCCHHHHCCCHHHHHHH
SLAEALDADSQARLRSAMREPVDASGSPVAIRLRRRDAEFTGLWHRHGGLTFLELEVPRH
HHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHEEEEECCCCEEEEEECCCH
EAAESHAFFCRTSGAIKRLQAAQSLEGACSAAAREVREITEFDRVKIYRFAPDFSGEVIA
HHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCEEE
EDRTEGVESFLGLHFPPSDIPAQARRLYATNPIRIIPDIDYIPVPIVPGHDPSTGQAIDL
CCHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEH
SFAVLRSVSPIHLEYMRNIGMRGTMSVSILRGDKLWGLIACHNRQPRYVGHDARQACDMV
HHHHHHCCCHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCHHHHHHHHH
AQVLAWQVGVMEEQAATRQTLKGKAIQRSLISDIEQLHDHRAGLVRNSEALLELMGASGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCE
CLFGREGITSIGRTPPEAAIEMLAGLVGRNDSAELFATDQLSTLFPEAKAFADVASGVLA
EEECCCCHHHCCCCCHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHCCEEE
VPLSRTTPRRVMLWFRPEVSQTVYWAGNPDKSVRAESGRLRPRTSFVAWTEETSGRALPW
ECCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC
QPHEIAAAVEIRDLVIDVILRNTEKLERVNTQLARSNEELEAFANVASHDIKEPLRHIEA
CCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
FAGLLGESIREMGDERLGLMVSGIEKSSQRLRILINDLAEFSQLGRRSKPLAQTSLMEVA
HHHHHHHHHHHHCHHHHHHHEECHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
QDVATDLHQRIEEAAAVVGIEQLPVAQCDRNQMRQVLQNLLSNALKYRHPGRPCRIRVYA
HHHHHHHHHHHHHHHHHHCHHHCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
EQRSAEEPRGEVGRAAASTRICVSDNGIGFDPKYAEQIFEPFQRLHGPDDYEGSGIGLAI
CCCCCCCCCHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
CRKIVQRHGGQVGVDTIPGSGSTFWFTLPIAVALSATP
HHHHHHHCCCEECCEECCCCCCEEEEEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]