| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is braF [H]
Identifier: 86751527
GI number: 86751527
Start: 5014996
End: 5015793
Strand: Direct
Name: braF [H]
Synonym: RPB_4426
Alternate gene names: 86751527
Gene position: 5014996-5015793 (Clockwise)
Preceding gene: 86751526
Following gene: 86751528
Centisome position: 94.06
GC content: 67.29
Gene sequence:
>798_bases ATGAGCGCCATCCTGAACGTCGCGGATGTCAGCAAGGCCTTCAGCGGCGTGCATGCGGTGCAGGGCACGTCGTTCGAGGT GGAAGCGGGCAGTATCACCGGCCTGATCGGCCCCAACGGCTCGGGCAAGAGCACGACCATCGACTGCATCAGCGGCTTTC AGACCCTCGATGCCGGCCGCGTCCTGCTCGGCGAGCGCGACATCACCGGGCTGCGGCCAGCGGAGATCGCCAAGGCCGGC ATGATCCGCACCTTCCAGAACGTGCGCGTCTACGATTCCTACAGCCTGCTCGACAATCTGCTCGTCGCCGGAGAAGCCTT CCGCGATCTGAACTGGTTCGATGCGCTGGCGCGGACGCCGCGCTATCGCCGGGTCCGCGACGCCGCCGAGGACCGCGCAC GCGGGCTGATCGACCTGGTCGGTCTGACCCGGCTCAGCGATGCGCCGGCCACGGTGCTGTCCTACGGCCAGAAGAAGCTG CTCGCCTTCGCGGCGGCGATGATGGCGAAGCCGCGCCTGATCGTACTCGACGAGCCGGTCGCCGGCGTCAACCCGACGCG GGTCAACGAAGTCGCCGACATCCTGCGCAAGGCCAACGCCACCGGCATCTCCTTCCTGATCGTCGAGCACAATGTCGAGT TCATCAACAGCCTCTGTCACAAGGTGATCGTGCTCGAACAGGGCCGCAAGCTGACGGAAGGCACGCCGGCGCAGATCCGC AACGATCCACGCGTGCTGGAGGCCTATCTCGGCATCGCCCGGCCGGCCGCCGCGGCGGCGGAGGCCGAGGCATCATGA
Upstream 100 bases:
>100_bases TCTATGGCGTGGTGCTGGTCGCGGTGATGATGTTCATGCCGCGCGGCGTGGCCGGCTGGCTCGAGGATCGGCGGATCGCC GCCTTGCGGAAGGCGCTGCG
Downstream 100 bases:
>100_bases GCAGCTACCCGAAACTGGAGATCATCAATCTCAGCGCCGGCTACGCCGATGTGCCGATCGTGCGCGATTTCTCCACCCGC CTCGCGCCCGGCTCGATCAC
Product: ABC transporter related
Products: ADP; phosphate; L-valine [Cytoplasm]; ADP; L-iso-leucine [Cytoplasm]; L-leucine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 265; Mature: 264
Protein sequence:
>265_residues MSAILNVADVSKAFSGVHAVQGTSFEVEAGSITGLIGPNGSGKSTTIDCISGFQTLDAGRVLLGERDITGLRPAEIAKAG MIRTFQNVRVYDSYSLLDNLLVAGEAFRDLNWFDALARTPRYRRVRDAAEDRARGLIDLVGLTRLSDAPATVLSYGQKKL LAFAAAMMAKPRLIVLDEPVAGVNPTRVNEVADILRKANATGISFLIVEHNVEFINSLCHKVIVLEQGRKLTEGTPAQIR NDPRVLEAYLGIARPAAAAAEAEAS
Sequences:
>Translated_265_residues MSAILNVADVSKAFSGVHAVQGTSFEVEAGSITGLIGPNGSGKSTTIDCISGFQTLDAGRVLLGERDITGLRPAEIAKAG MIRTFQNVRVYDSYSLLDNLLVAGEAFRDLNWFDALARTPRYRRVRDAAEDRARGLIDLVGLTRLSDAPATVLSYGQKKL LAFAAAMMAKPRLIVLDEPVAGVNPTRVNEVADILRKANATGISFLIVEHNVEFINSLCHKVIVLEQGRKLTEGTPAQIR NDPRVLEAYLGIARPAAAAAEAEAS >Mature_264_residues SAILNVADVSKAFSGVHAVQGTSFEVEAGSITGLIGPNGSGKSTTIDCISGFQTLDAGRVLLGERDITGLRPAEIAKAGM IRTFQNVRVYDSYSLLDNLLVAGEAFRDLNWFDALARTPRYRRVRDAAEDRARGLIDLVGLTRLSDAPATVLSYGQKKLL AFAAAMMAKPRLIVLDEPVAGVNPTRVNEVADILRKANATGISFLIVEHNVEFINSLCHKVIVLEQGRKLTEGTPAQIRN DPRVLEAYLGIARPAAAAAEAEAS
Specific function: Component of the high affinity leucine, isoleucine, valine, transport system (LIV-I), which is operative without Na(+) and is specific for alanine and threonine, in addition to branched-chain amino acids [H]
COG id: COG0411
COG function: function code E; ABC-type branched-chain amino acid transport systems, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI31657092, Length=228, Percent_Identity=27.1929824561404, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI27881501, Length=227, Percent_Identity=26.431718061674, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI30795238, Length=227, Percent_Identity=26.431718061674, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI116734710, Length=241, Percent_Identity=25.7261410788382, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI27477115, Length=218, Percent_Identity=28.4403669724771, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI105990541, Length=241, Percent_Identity=24.4813278008299, Blast_Score=75, Evalue=8e-14, Organism=Homo sapiens, GI9955968, Length=239, Percent_Identity=25.9414225941423, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI9955966, Length=239, Percent_Identity=25.9414225941423, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI45243524, Length=239, Percent_Identity=25.9414225941423, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI27436953, Length=234, Percent_Identity=24.7863247863248, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI47078218, Length=243, Percent_Identity=24.6913580246914, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI150417984, Length=241, Percent_Identity=26.5560165975104, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI45446740, Length=262, Percent_Identity=24.0458015267176, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI153792144, Length=197, Percent_Identity=26.3959390862944, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI21536376, Length=279, Percent_Identity=22.9390681003584, Blast_Score=67, Evalue=1e-11, Organism=Escherichia coli, GI1789864, Length=251, Percent_Identity=35.8565737051793, Blast_Score=184, Evalue=5e-48, Organism=Escherichia coli, GI1789593, Length=249, Percent_Identity=31.7269076305221, Blast_Score=126, Evalue=1e-30, Organism=Escherichia coli, GI1790544, Length=280, Percent_Identity=29.6428571428571, Blast_Score=107, Evalue=6e-25, Organism=Escherichia coli, GI1787370, Length=252, Percent_Identity=29.3650793650794, Blast_Score=104, Evalue=5e-24, Organism=Escherichia coli, GI1786398, Length=250, Percent_Identity=27.2, Blast_Score=104, Evalue=6e-24, Organism=Escherichia coli, GI1788225, Length=269, Percent_Identity=28.2527881040892, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI1787029, Length=244, Percent_Identity=25.8196721311475, Blast_Score=100, Evalue=8e-23, Organism=Escherichia coli, GI87082268, Length=251, Percent_Identity=26.2948207171315, Blast_Score=99, Evalue=2e-22, Organism=Escherichia coli, GI1789672, Length=250, Percent_Identity=25.6, Blast_Score=99, Evalue=4e-22, Organism=Escherichia coli, GI1786872, Length=249, Percent_Identity=26.1044176706827, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1788761, Length=251, Percent_Identity=26.2948207171315, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1786319, Length=246, Percent_Identity=28.0487804878049, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1788472, Length=228, Percent_Identity=25.8771929824561, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1790190, Length=245, Percent_Identity=24.4897959183673, Blast_Score=92, Evalue=5e-20, Organism=Escherichia coli, GI48995001, Length=225, Percent_Identity=27.5555555555556, Blast_Score=91, Evalue=7e-20, Organism=Escherichia coli, GI1790525, Length=238, Percent_Identity=24.3697478991597, Blast_Score=91, Evalue=9e-20, Organism=Escherichia coli, GI87081791, Length=247, Percent_Identity=24.6963562753036, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI1787712, Length=245, Percent_Identity=26.530612244898, Blast_Score=88, Evalue=7e-19, Organism=Escherichia coli, GI1790467, Length=256, Percent_Identity=26.953125, Blast_Score=87, Evalue=9e-19, Organism=Escherichia coli, GI1788897, Length=223, Percent_Identity=29.1479820627803, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI1788644, Length=252, Percent_Identity=27.7777777777778, Blast_Score=84, Evalue=9e-18, Organism=Escherichia coli, GI1789873, Length=235, Percent_Identity=26.3829787234043, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI1789991, Length=234, Percent_Identity=22.6495726495727, Blast_Score=81, Evalue=8e-17, Organism=Escherichia coli, GI1788450, Length=243, Percent_Identity=25.1028806584362, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI87081782, Length=257, Percent_Identity=25.2918287937743, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1787759, Length=260, Percent_Identity=27.6923076923077, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1787792, Length=239, Percent_Identity=22.5941422594142, Blast_Score=78, Evalue=7e-16, Organism=Escherichia coli, GI1788210, Length=249, Percent_Identity=23.2931726907631, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1787089, Length=228, Percent_Identity=26.3157894736842, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1788506, Length=236, Percent_Identity=28.3898305084746, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI87081709, Length=253, Percent_Identity=22.5296442687747, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1786975, Length=208, Percent_Identity=26.4423076923077, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI87082267, Length=257, Percent_Identity=25.2918287937743, Blast_Score=71, Evalue=6e-14, Organism=Escherichia coli, GI48994943, Length=201, Percent_Identity=25.3731343283582, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1787500, Length=227, Percent_Identity=23.7885462555066, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1789586, Length=255, Percent_Identity=27.843137254902, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1789962, Length=233, Percent_Identity=24.4635193133047, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1790739, Length=241, Percent_Identity=24.4813278008299, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1786345, Length=260, Percent_Identity=27.3076923076923, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1787164, Length=222, Percent_Identity=28.3783783783784, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI87081834, Length=213, Percent_Identity=23.943661971831, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI1787758, Length=236, Percent_Identity=25, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI48994883, Length=254, Percent_Identity=24.0157480314961, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1786803, Length=218, Percent_Identity=24.7706422018349, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1789032, Length=227, Percent_Identity=25.5506607929515, Blast_Score=65, Evalue=7e-12, Organism=Escherichia coli, GI1787112, Length=222, Percent_Identity=26.5765765765766, Blast_Score=64, Evalue=8e-12, Organism=Escherichia coli, GI1787105, Length=232, Percent_Identity=23.7068965517241, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI48994997, Length=244, Percent_Identity=23.3606557377049, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1786253, Length=250, Percent_Identity=23.2, Blast_Score=60, Evalue=1e-10, Organism=Caenorhabditis elegans, GI71983523, Length=238, Percent_Identity=25.2100840336134, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI71983516, Length=238, Percent_Identity=25.2100840336134, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI71983510, Length=238, Percent_Identity=25.2100840336134, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17510237, Length=244, Percent_Identity=25, Blast_Score=81, Evalue=5e-16, Organism=Caenorhabditis elegans, GI115533608, Length=230, Percent_Identity=25.6521739130435, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24666092, Length=233, Percent_Identity=27.8969957081545, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI24643674, Length=232, Percent_Identity=23.7068965517241, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI28574150, Length=227, Percent_Identity=25.5506607929515, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI116007328, Length=227, Percent_Identity=25.5506607929515, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24648314, Length=239, Percent_Identity=26.3598326359833, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI85725262, Length=237, Percent_Identity=25.7383966244726, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI28574533, Length=227, Percent_Identity=25.1101321585903, Blast_Score=69, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 28402; Mature: 28271
Theoretical pI: Translated: 7.51; Mature: 7.51
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAILNVADVSKAFSGVHAVQGTSFEVEAGSITGLIGPNGSGKSTTIDCISGFQTLDAGR CCCHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEECCCCCCCCCHHHHHHCHHHHCCCE VLLGERDITGLRPAEIAKAGMIRTFQNVRVYDSYSLLDNLLVAGEAFRDLNWFDALARTP EEECCCCCCCCCHHHHHHHHHHHHHHCEEEEEHHHHHHHHHHHHHHHHCCHHHHHHHCCC RYRRVRDAAEDRARGLIDLVGLTRLSDAPATVLSYGQKKLLAFAAAMMAKPRLIVLDEPV HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC AGVNPTRVNEVADILRKANATGISFLIVEHNVEFINSLCHKVIVLEQGRKLTEGTPAQIR CCCCCHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCHHHC NDPRVLEAYLGIARPAAAAAEAEAS CCHHHHHHHHHHCCCHHHHHCCCCC >Mature Secondary Structure SAILNVADVSKAFSGVHAVQGTSFEVEAGSITGLIGPNGSGKSTTIDCISGFQTLDAGR CCHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEECCCCCCCCCHHHHHHCHHHHCCCE VLLGERDITGLRPAEIAKAGMIRTFQNVRVYDSYSLLDNLLVAGEAFRDLNWFDALARTP EEECCCCCCCCCHHHHHHHHHHHHHHCEEEEEHHHHHHHHHHHHHHHHCCHHHHHHHCCC RYRRVRDAAEDRARGLIDLVGLTRLSDAPATVLSYGQKKLLAFAAAMMAKPRLIVLDEPV HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC AGVNPTRVNEVADILRKANATGISFLIVEHNVEFINSLCHKVIVLEQGRKLTEGTPAQIR CCCCCHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCHHHC NDPRVLEAYLGIARPAAAAAEAEAS CCHHHHHHHHHHCCCHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-valine [Periplasm]; H2O; ATP; L-iso-leucine [Periplasm]; L-leucine [Periplasm] [C]
Specific reaction: ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 2120183; 10984043 [H]