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The map label for this gene is yoaD [C]

Identifier: 86751437

GI number: 86751437

Start: 4920930

End: 4922147

Strand: Direct

Name: yoaD [C]

Synonym: RPB_4335

Alternate gene names: 86751437

Gene position: 4920930-4922147 (Clockwise)

Preceding gene: 86751436

Following gene: 86751439

Centisome position: 92.3

GC content: 67.82

Gene sequence:

>1218_bases
ATGACGACCACCACGATCGAACGACACGAATGCGCGGCGCCCGCTGGGTTCGGACGCCGCAAAGTCTCGCCCCGCGCCTG
CATCATCGACGGCAAACCGCATCTGCGGACGTTCCTCGCCGACACGCTGGAGGAGTTGCGTTTCGTCACCAGCGAGTGCG
GCGGTGTCGAGGAATTGTCGCAGCGTATCCTCGCCCAGCAGCCCGACATGCTGGTGGTCGGCGCCTCGGTCGGCGGCGTC
GAGGCGGCCCGGATTCTCGACGTCGCCGGCGACGCCGGATTCCGCGGCAGCGTGATGCTGATCTCCGCGCGCGAGAGCAT
TGCGCTGCGCGGCATTCTGCACCACGGCCTCGAGCGTGGCCTGACCATGCTGCCGCCGCTGACCACGCCGTTCAGCGCGC
AGATGCTGCGCGAGAGTCTCGCGCCGCTGCTGCCGCAAGAGCCTCCGCCCCGCCCCCAGGTCGATGTCGCCGAGGCGCTG
AAGACCGGCTGGCTGGAGCTGTGGTACCAGCGCAAGCTCGACGCGCGGTCGCTGATACCTTGCGGCGCCGAGGCGTTGGT
GCGGATGCGGCACCCGAACTGGGGCGTGGTGGTGCCGTCCGCGTTCCTGCCCGACCGCAACGACCCGCATTTCCGCGCGC
TGTCGGAATTCGTCGTCGCGCGCGCGATCGCGGACTGGCGCTATCTGCTCGATCATCACGGCCCGGTCGATCTGTCGATC
AATCTTCCGGTCGACTTCCTGCTCGACGCGCAGGCGGTCGAGGATCTGTGTGCGTGGATCCCGACGCATCCGGCGTTCGG
CGGATTGATCGTCGAGATCAACGCCGCCGAAGCCGCCAACCATATCGACGCGATGATCGACGCCGCGCGCCGGCTGCGGC
TGCACAACGTTGCGATCTCGATCGACAAGGTCGGCGCCGACTGGCCGGAACTGATGCATCGCGCGGCGTTTCCGTTCGTC
GAACTCAAGGTCGACCGCGCTTATGTCACCGGCTGCGCCGACGATCGGCTGAAACGGACGGTGTGCCGGCGGATCGTCGA
CCTCGCCGCCGACTATGGCGCGCGCTGCACCGCGACCGGAATCGAGAGCCGCTCCGACTACGTCGCGGCCCACGAGATCG
GCTTCGATCTGGTCCAGGGCTATCTGTTCGGCAAGCCGATGGGGCTGAAGAAATTCGCCCGCGCCGCCACGACGAAGTCG
CTCGGCACGCTGGAATAG

Upstream 100 bases:

>100_bases
GGTTTAACCCTACCCGGGACTTCATGTGGGTCGCGGAACAATTCCACAATTCGAACGCGTTCCGACCCGTAAAACTGCGA
CGGGTAACGGGGGAACGACG

Downstream 100 bases:

>100_bases
CGGCGCGCTACTCCTCGAACGTCATGTCGAGGCACTTCGACACGTCGCCGCCGAGACCCGACGCGATGATGACGCAGCCG
CGCACCTTGCGGTTGGCCGT

Product: response regulator receiver modulated diguanylate phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 404

Protein sequence:

>405_residues
MTTTTIERHECAAPAGFGRRKVSPRACIIDGKPHLRTFLADTLEELRFVTSECGGVEELSQRILAQQPDMLVVGASVGGV
EAARILDVAGDAGFRGSVMLISARESIALRGILHHGLERGLTMLPPLTTPFSAQMLRESLAPLLPQEPPPRPQVDVAEAL
KTGWLELWYQRKLDARSLIPCGAEALVRMRHPNWGVVVPSAFLPDRNDPHFRALSEFVVARAIADWRYLLDHHGPVDLSI
NLPVDFLLDAQAVEDLCAWIPTHPAFGGLIVEINAAEAANHIDAMIDAARRLRLHNVAISIDKVGADWPELMHRAAFPFV
ELKVDRAYVTGCADDRLKRTVCRRIVDLAADYGARCTATGIESRSDYVAAHEIGFDLVQGYLFGKPMGLKKFARAATTKS
LGTLE

Sequences:

>Translated_405_residues
MTTTTIERHECAAPAGFGRRKVSPRACIIDGKPHLRTFLADTLEELRFVTSECGGVEELSQRILAQQPDMLVVGASVGGV
EAARILDVAGDAGFRGSVMLISARESIALRGILHHGLERGLTMLPPLTTPFSAQMLRESLAPLLPQEPPPRPQVDVAEAL
KTGWLELWYQRKLDARSLIPCGAEALVRMRHPNWGVVVPSAFLPDRNDPHFRALSEFVVARAIADWRYLLDHHGPVDLSI
NLPVDFLLDAQAVEDLCAWIPTHPAFGGLIVEINAAEAANHIDAMIDAARRLRLHNVAISIDKVGADWPELMHRAAFPFV
ELKVDRAYVTGCADDRLKRTVCRRIVDLAADYGARCTATGIESRSDYVAAHEIGFDLVQGYLFGKPMGLKKFARAATTKS
LGTLE
>Mature_404_residues
TTTTIERHECAAPAGFGRRKVSPRACIIDGKPHLRTFLADTLEELRFVTSECGGVEELSQRILAQQPDMLVVGASVGGVE
AARILDVAGDAGFRGSVMLISARESIALRGILHHGLERGLTMLPPLTTPFSAQMLRESLAPLLPQEPPPRPQVDVAEALK
TGWLELWYQRKLDARSLIPCGAEALVRMRHPNWGVVVPSAFLPDRNDPHFRALSEFVVARAIADWRYLLDHHGPVDLSIN
LPVDFLLDAQAVEDLCAWIPTHPAFGGLIVEINAAEAANHIDAMIDAARRLRLHNVAISIDKVGADWPELMHRAAFPFVE
LKVDRAYVTGCADDRLKRTVCRRIVDLAADYGARCTATGIESRSDYVAAHEIGFDLVQGYLFGKPMGLKKFARAATTKSL
GTLE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI87081980, Length=238, Percent_Identity=27.7310924369748, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI87081921, Length=241, Percent_Identity=26.9709543568465, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI1786507, Length=255, Percent_Identity=23.921568627451, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788502, Length=252, Percent_Identity=26.1904761904762, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI226510982, Length=250, Percent_Identity=23.2, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 44425; Mature: 44294

Theoretical pI: Translated: 6.70; Mature: 6.70

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTTTIERHECAAPAGFGRRKVSPRACIIDGKPHLRTFLADTLEELRFVTSECGGVEELS
CCCCCCCHHHCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
QRILAQQPDMLVVGASVGGVEAARILDVAGDAGFRGSVMLISARESIALRGILHHGLERG
HHHHHCCCCEEEEECCCCCCHHHHHHEECCCCCCCCCEEEEECCHHHHHHHHHHHHHHCC
LTMLPPLTTPFSAQMLRESLAPLLPQEPPPRPQVDVAEALKTGWLELWYQRKLDARSLIP
CEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
CGAEALVRMRHPNWGVVVPSAFLPDRNDPHFRALSEFVVARAIADWRYLLDHHGPVDLSI
CCHHHHHHCCCCCCCEEECHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
NLPVDFLLDAQAVEDLCAWIPTHPAFGGLIVEINAAEAANHIDAMIDAARRLRLHNVAIS
ECCHHHHCCHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHEEEE
IDKVGADWPELMHRAAFPFVELKVDRAYVTGCADDRLKRTVCRRIVDLAADYGARCTATG
EECCCCCHHHHHHHHCCCEEEEEECHHEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECC
IESRSDYVAAHEIGFDLVQGYLFGKPMGLKKFARAATTKSLGTLE
CCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TTTTIERHECAAPAGFGRRKVSPRACIIDGKPHLRTFLADTLEELRFVTSECGGVEELS
CCCCCCHHHCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
QRILAQQPDMLVVGASVGGVEAARILDVAGDAGFRGSVMLISARESIALRGILHHGLERG
HHHHHCCCCEEEEECCCCCCHHHHHHEECCCCCCCCCEEEEECCHHHHHHHHHHHHHHCC
LTMLPPLTTPFSAQMLRESLAPLLPQEPPPRPQVDVAEALKTGWLELWYQRKLDARSLIP
CEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
CGAEALVRMRHPNWGVVVPSAFLPDRNDPHFRALSEFVVARAIADWRYLLDHHGPVDLSI
CCHHHHHHCCCCCCCEEECHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
NLPVDFLLDAQAVEDLCAWIPTHPAFGGLIVEINAAEAANHIDAMIDAARRLRLHNVAIS
ECCHHHHCCHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHEEEE
IDKVGADWPELMHRAAFPFVELKVDRAYVTGCADDRLKRTVCRRIVDLAADYGARCTATG
EECCCCCHHHHHHHHCCCEEEEEECHHEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECC
IESRSDYVAAHEIGFDLVQGYLFGKPMGLKKFARAATTKSLGTLE
CCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]