Click here to switch to the map view.

The map label for this gene is 86751219

Identifier: 86751219

GI number: 86751219

Start: 4682397

End: 4684508

Strand: Reverse

Name: 86751219

Synonym: RPB_4111

Alternate gene names: NA

Gene position: 4684508-4682397 (Counterclockwise)

Preceding gene: 86751220

Following gene: 86751218

Centisome position: 87.86

GC content: 65.81

Gene sequence:

>2112_bases
TTGATACGATCCTCTGTACGCGTTCTGCTCGCCGCAGCTCTGACGACGACCGTCCTCTCCTCGGCGCATTCCGAGCCGAA
GCCGATTCTCCCCAATCGCCCGACGGCGGTGCGCGCGCAATCGGTGCCCGGCAATATCGTGGCGGCCGTGCCGGGCGCGC
GCACCCCTTTGCCCGATCCGCAACTCCTGAAGTCGGTTTCGGTCGGAGTGCTGTTTGCCAATGTCGGCTATCCCAACGGC
TTCCGGTTCTCCAATCTGGGCGGCCGCCGCGACGTCTACATTCCGGTGCCGCAGGGCATCGAACTAAGCCCCGCCGCTCT
TGTCCTGGTCTTCGACGACGTCAGCGCCCATGAGGCACGCCGCAGTCTGGAAATTCTGGTGAACGATCGCTCGGTGTCGG
CGGTCGCGCTCGACGGCAAGAGCAGTGGCCGCACCGTCCATGTGCCTCTGCTCGGCGTCGCGGCGCGCGACGGGTTTCTC
AAACTGTCGTTTCTGTATTCCGGCGCAGCAACGCAGGATCGCTGCATCGACGTGCGTTATGTCGGCGACAGCCTGACGAT
GCGCCCGGAATCCGCGGTGGAGTTCGAGATCGGCGTGAGCGGCGCGCCGAGTATCGCCGCGACCGCGGCGCTGATGCCGC
AGAATGTCGCCATCCTGCTGTCGAGTCCACGTCCGCCGTCGGCGGATGTCGCGGCCGCCTTGACGCTGGCGCGCTCGCTC
AGCGCCAACGGCCGACAGATCAGTTTCTATCACGGCGTCGAAAGCTTGCCGCCGCTGGTGAAATCCGACGACCCCCATCA
ATGGATCCGCGGTCTGATCGTGGTTGGCAGTCTTGACCGTATGGTGGGACACATCGACCCGCCGCGGCCGAGCGTGGCGA
GCGCTGCGGGAACAGCCCCGATCGATAATACGCTCGCCGCCGGCAGGATTGGCGGCATTCCGATGTTGATGTTGACCGAC
GCCGCTTCCGCGCGCGCCGGCCGCTTGATCGGGAATCCTTCTCTCGCAGCCTTGCGCGACACGCCATCCGCCTCGGTCGG
CCACGCAACGTCGCCGAACGGTTCGACCGAACGCGTCAATTTCGACGAACTGGGCCTGGTGCCGGCGAAGGCGGAGGTGT
TCGGCCGTGCCGATCTCGCCGTCACCGTCGCCAACCGCATGCTGCCGGGCGGCACGCGGCCATCCCGGATCCTGCTCGAT
GTGATGGTGGCGCCGGATGGTGCCGGCGAAAAGGCCGTCGTGAGTGCGTTCGTCAATGAGCGGCTGATCTCGAGTTCGGT
CGCCGCAATCGGCGAGCCGACCCGGCTCGATCTGGCGCTCCCCGAGGGGCTGGTCGGCGCGGCCGCGAACATCCGCGTGG
TTGTCCAGCGTCGCAGCGCGCAGGGCGATTGCAGGTTCGAACCGCAAGGCTATCCGGCGGAGATTCTCGGTTCGAGTTCG
GTGATTCTCTCACCGACTGGAGCGGCCGCCCAGGATTTTTCCGACCTTTCGACGTTCTGGGCAAATGGTGTCGAAGTGCT
GGTGCCGTCCGCGACCGCGGTCAAGCCGCTCTCCGTCATCCCAATGCTGGCGGATGTCGTGAACGGGCTGTCGCGCGAAG
CGGCACCGATCACCGTGCGATACGTCGATGCCGGCGCTACGCCAACGCCGACAGCGTCGTTTATCGCGGTCAGCAATCTG
GCGCCGGCCGGCGCCGAGCAACGGGTTCGCTTCGATCGCGGCAGGGTGGCGATCGTCGACCGATCCGGCCGAACGCGTCT
TGATATCGGTGGATTCGCCAGCGGCGCGGTGGCGCAAATCGTGACCGCCGGGGCGTTTCCGGGACTTTGGATCAAACCTC
TCTCAGCCGACAGCGCGCTCCCCGTCGCGCCCGCCATCGACCTCGATCGCGGCGACGTGGCGTTTCTCGACAAAACCGGC
GTTGCTTTGGCGATGTCGACCGAGCGCGACACCTTGCTGCGGGTGTCTTATCCCGATCAGCGATCCTGGCTGAATTCGTT
CTCACGCTTCCGATCGTGGATCATCGGCGGGGTCTGGGTTCTCGTCACGCTCGGCCTGTTGTTCATTCTGCAACGCGTAT
ACCGGCGCCGCGCCCTGACCACGGACAAGTGA

Upstream 100 bases:

>100_bases
TGACCGATGACGAACTCGCGCAGTTGAAGGACGGCCTCACTGCGCTCTGGACCGCCGCGCTTGCCGACATTTCATATGAG
ACAGTTCAGGAGTGAGTAGC

Downstream 100 bases:

>100_bases
GGGACCGATGCAGCCGCTCTCGCCCTCGGATCTCGCCCTCGGCGACCTGCTCGTCGCCCGCCGCGTTCTCAATCTGCAGC
AACTCGACGAGGCCGTCGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 703; Mature: 703

Protein sequence:

>703_residues
MIRSSVRVLLAAALTTTVLSSAHSEPKPILPNRPTAVRAQSVPGNIVAAVPGARTPLPDPQLLKSVSVGVLFANVGYPNG
FRFSNLGGRRDVYIPVPQGIELSPAALVLVFDDVSAHEARRSLEILVNDRSVSAVALDGKSSGRTVHVPLLGVAARDGFL
KLSFLYSGAATQDRCIDVRYVGDSLTMRPESAVEFEIGVSGAPSIAATAALMPQNVAILLSSPRPPSADVAAALTLARSL
SANGRQISFYHGVESLPPLVKSDDPHQWIRGLIVVGSLDRMVGHIDPPRPSVASAAGTAPIDNTLAAGRIGGIPMLMLTD
AASARAGRLIGNPSLAALRDTPSASVGHATSPNGSTERVNFDELGLVPAKAEVFGRADLAVTVANRMLPGGTRPSRILLD
VMVAPDGAGEKAVVSAFVNERLISSSVAAIGEPTRLDLALPEGLVGAAANIRVVVQRRSAQGDCRFEPQGYPAEILGSSS
VILSPTGAAAQDFSDLSTFWANGVEVLVPSATAVKPLSVIPMLADVVNGLSREAAPITVRYVDAGATPTPTASFIAVSNL
APAGAEQRVRFDRGRVAIVDRSGRTRLDIGGFASGAVAQIVTAGAFPGLWIKPLSADSALPVAPAIDLDRGDVAFLDKTG
VALAMSTERDTLLRVSYPDQRSWLNSFSRFRSWIIGGVWVLVTLGLLFILQRVYRRRALTTDK

Sequences:

>Translated_703_residues
MIRSSVRVLLAAALTTTVLSSAHSEPKPILPNRPTAVRAQSVPGNIVAAVPGARTPLPDPQLLKSVSVGVLFANVGYPNG
FRFSNLGGRRDVYIPVPQGIELSPAALVLVFDDVSAHEARRSLEILVNDRSVSAVALDGKSSGRTVHVPLLGVAARDGFL
KLSFLYSGAATQDRCIDVRYVGDSLTMRPESAVEFEIGVSGAPSIAATAALMPQNVAILLSSPRPPSADVAAALTLARSL
SANGRQISFYHGVESLPPLVKSDDPHQWIRGLIVVGSLDRMVGHIDPPRPSVASAAGTAPIDNTLAAGRIGGIPMLMLTD
AASARAGRLIGNPSLAALRDTPSASVGHATSPNGSTERVNFDELGLVPAKAEVFGRADLAVTVANRMLPGGTRPSRILLD
VMVAPDGAGEKAVVSAFVNERLISSSVAAIGEPTRLDLALPEGLVGAAANIRVVVQRRSAQGDCRFEPQGYPAEILGSSS
VILSPTGAAAQDFSDLSTFWANGVEVLVPSATAVKPLSVIPMLADVVNGLSREAAPITVRYVDAGATPTPTASFIAVSNL
APAGAEQRVRFDRGRVAIVDRSGRTRLDIGGFASGAVAQIVTAGAFPGLWIKPLSADSALPVAPAIDLDRGDVAFLDKTG
VALAMSTERDTLLRVSYPDQRSWLNSFSRFRSWIIGGVWVLVTLGLLFILQRVYRRRALTTDK
>Mature_703_residues
MIRSSVRVLLAAALTTTVLSSAHSEPKPILPNRPTAVRAQSVPGNIVAAVPGARTPLPDPQLLKSVSVGVLFANVGYPNG
FRFSNLGGRRDVYIPVPQGIELSPAALVLVFDDVSAHEARRSLEILVNDRSVSAVALDGKSSGRTVHVPLLGVAARDGFL
KLSFLYSGAATQDRCIDVRYVGDSLTMRPESAVEFEIGVSGAPSIAATAALMPQNVAILLSSPRPPSADVAAALTLARSL
SANGRQISFYHGVESLPPLVKSDDPHQWIRGLIVVGSLDRMVGHIDPPRPSVASAAGTAPIDNTLAAGRIGGIPMLMLTD
AASARAGRLIGNPSLAALRDTPSASVGHATSPNGSTERVNFDELGLVPAKAEVFGRADLAVTVANRMLPGGTRPSRILLD
VMVAPDGAGEKAVVSAFVNERLISSSVAAIGEPTRLDLALPEGLVGAAANIRVVVQRRSAQGDCRFEPQGYPAEILGSSS
VILSPTGAAAQDFSDLSTFWANGVEVLVPSATAVKPLSVIPMLADVVNGLSREAAPITVRYVDAGATPTPTASFIAVSNL
APAGAEQRVRFDRGRVAIVDRSGRTRLDIGGFASGAVAQIVTAGAFPGLWIKPLSADSALPVAPAIDLDRGDVAFLDKTG
VALAMSTERDTLLRVSYPDQRSWLNSFSRFRSWIIGGVWVLVTLGLLFILQRVYRRRALTTDK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 73549; Mature: 73549

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRSSVRVLLAAALTTTVLSSAHSEPKPILPNRPTAVRAQSVPGNIVAAVPGARTPLPDP
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCH
QLLKSVSVGVLFANVGYPNGFRFSNLGGRRDVYIPVPQGIELSPAALVLVFDDVSAHEAR
HHHHHHCEEEEEEECCCCCCEEECCCCCCEEEEEECCCCCCCCCEEEEEEEECCCHHHHH
RSLEILVNDRSVSAVALDGKSSGRTVHVPLLGVAARDGFLKLSFLYSGAATQDRCIDVRY
CEEEEEEECCCEEEEEECCCCCCCEEEEEEEEEEECCCEEEEEEEECCCCCCCCEEEEEE
VGDSLTMRPESAVEFEIGVSGAPSIAATAALMPQNVAILLSSPRPPSADVAAALTLARSL
ECCCEEECCCCCEEEEECCCCCCHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHH
SANGRQISFYHGVESLPPLVKSDDPHQWIRGLIVVGSLDRMVGHIDPPRPSVASAAGTAP
CCCCCEEEEECCHHHCCCCCCCCCHHHHHHHEEEEECHHHHHCCCCCCCCCHHHCCCCCC
IDNTLAAGRIGGIPMLMLTDAASARAGRLIGNPSLAALRDTPSASVGHATSPNGSTERVN
CCCCCCCCCCCCCEEEEEECCCCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCEEC
FDELGLVPAKAEVFGRADLAVTVANRMLPGGTRPSRILLDVMVAPDGAGEKAVVSAFVNE
HHHHCCCCCHHHHHCCCCEEEEEHHHCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHH
RLISSSVAAIGEPTRLDLALPEGLVGAAANIRVVVQRRSAQGDCRFEPQGYPAEILGSSS
HHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCEEECCCCCCHHHCCCCC
VILSPTGAAAQDFSDLSTFWANGVEVLVPSATAVKPLSVIPMLADVVNGLSREAAPITVR
EEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEE
YVDAGATPTPTASFIAVSNLAPAGAEQRVRFDRGRVAIVDRSGRTRLDIGGFASGAVAQI
EEECCCCCCCCCCEEEEECCCCCCCHHHEEECCCCEEEEECCCCEEEEECCCCCCHHHHH
VTAGAFPGLWIKPLSADSALPVAPAIDLDRGDVAFLDKTGVALAMSTERDTLLRVSYPDQ
HHHCCCCCCEEEECCCCCCCCCCCCEECCCCCEEEEECCCEEEEEECCCCEEEEEECCCH
RSWLNSFSRFRSWIIGGVWVLVTLGLLFILQRVYRRRALTTDK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MIRSSVRVLLAAALTTTVLSSAHSEPKPILPNRPTAVRAQSVPGNIVAAVPGARTPLPDP
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCH
QLLKSVSVGVLFANVGYPNGFRFSNLGGRRDVYIPVPQGIELSPAALVLVFDDVSAHEAR
HHHHHHCEEEEEEECCCCCCEEECCCCCCEEEEEECCCCCCCCCEEEEEEEECCCHHHHH
RSLEILVNDRSVSAVALDGKSSGRTVHVPLLGVAARDGFLKLSFLYSGAATQDRCIDVRY
CEEEEEEECCCEEEEEECCCCCCCEEEEEEEEEEECCCEEEEEEEECCCCCCCCEEEEEE
VGDSLTMRPESAVEFEIGVSGAPSIAATAALMPQNVAILLSSPRPPSADVAAALTLARSL
ECCCEEECCCCCEEEEECCCCCCHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHH
SANGRQISFYHGVESLPPLVKSDDPHQWIRGLIVVGSLDRMVGHIDPPRPSVASAAGTAP
CCCCCEEEEECCHHHCCCCCCCCCHHHHHHHEEEEECHHHHHCCCCCCCCCHHHCCCCCC
IDNTLAAGRIGGIPMLMLTDAASARAGRLIGNPSLAALRDTPSASVGHATSPNGSTERVN
CCCCCCCCCCCCCEEEEEECCCCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCEEC
FDELGLVPAKAEVFGRADLAVTVANRMLPGGTRPSRILLDVMVAPDGAGEKAVVSAFVNE
HHHHCCCCCHHHHHCCCCEEEEEHHHCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHH
RLISSSVAAIGEPTRLDLALPEGLVGAAANIRVVVQRRSAQGDCRFEPQGYPAEILGSSS
HHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCEEECCCCCCHHHCCCCC
VILSPTGAAAQDFSDLSTFWANGVEVLVPSATAVKPLSVIPMLADVVNGLSREAAPITVR
EEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEE
YVDAGATPTPTASFIAVSNLAPAGAEQRVRFDRGRVAIVDRSGRTRLDIGGFASGAVAQI
EEECCCCCCCCCCEEEEECCCCCCCHHHEEECCCCEEEEECCCCEEEEECCCCCCHHHHH
VTAGAFPGLWIKPLSADSALPVAPAIDLDRGDVAFLDKTGVALAMSTERDTLLRVSYPDQ
HHHCCCCCCEEEECCCCCCCCCCCCEECCCCCEEEEECCCEEEEEECCCCEEEEEECCCH
RSWLNSFSRFRSWIIGGVWVLVTLGLLFILQRVYRRRALTTDK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA