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The map label for this gene is ydaM [H]

Identifier: 86751218

GI number: 86751218

Start: 4680509

End: 4682389

Strand: Reverse

Name: ydaM [H]

Synonym: RPB_4110

Alternate gene names: 86751218

Gene position: 4682389-4680509 (Counterclockwise)

Preceding gene: 86751219

Following gene: 86751217

Centisome position: 87.82

GC content: 63.05

Gene sequence:

>1881_bases
ATGCAGCCGCTCTCGCCCTCGGATCTCGCCCTCGGCGACCTGCTCGTCGCCCGCCGCGTTCTCAATCTGCAGCAACTCGA
CGAGGCCGTCGGCCTCGCCGAGGCTTGGCATGTCCGGCTCGGCGACGCGATCCTGTCGCGGGCCTGGATCGAACCCGCTG
TGTACTACCAGGCGGTCGCCTATCACTACGAGCTGCCGTTCGTCGATCTGATCGGCGACGCCCCGGATCCGTCGCTGCTC
GCCGCCGACGAGGCGGAGCTTTACGCCCGCCGGCTGACGATGCCTTGGCGAATCCGGGATGGCCGGCTCGTGATCGCGAC
CGCGGAGCCTGGTCCCGGCGTTGTCCTGTTCGCACGGCGTCGCTGGGGCAACGCGATCGAATTCGTCGTCGCTTCCAAAT
TCGACATTGTCTGGGCGGTGCAAACCGTCTTTGCCGACGCGCTGTCGCATCGCGCCGTGTACGAGCTCGCCGAGCTCGAT
CCGGACATGTCGGCCCAACAGGTGTTTTCGCCGGTCCAGGTGCTGTTTGGATATGGTGTGGCGACGTGTCTGCTGGTCGG
GCTGGCGCTCGCACCGATCGCGACGCTGGTCGCGGTCAATCTGATCCTGAGCCTGTTCTATCTCGGCAACTTCCTGTTCA
AGGGGGTTCTGGTTTCGGTCGGGGGCGCCCGCTCGGTCGATCGCGACGAGGCCATCGCGATCGCGGCGCGTGCGCTCAGC
GACGACGATCTGCCGGTGTTCACCGTGCTGGTGCCGATGTATCGCGAGCCGAAAATGCTGCCGATGCTGGCCCGCTCGTT
GCGTCAGCTCGATTACCCGCTCGGCAAGCTCGACATCAAATTGGTGCTGGAGGCCGACGATCACGAAACCATCGAGGTCG
CCAGCACGCTCGGACTCGAAGGCATCTTCGAAGTCATTCGAGTGCCGCCGTCGCATCCGCAGACCAAGCCGAAGGCCTGC
AATTTCGCGCTGCAATTCGCCCGTGGCGAATTCCTGGTGATCTACGACGCCGAGGATCGGCCGGAGCCGGACCAACTCCG
CAAGGTGGTGGCGACGTTCCGGCAGGCGCCGGCCAACACCGCGTGCCTGCAATGCCGCCTGAGTTACTTCAACGCTCGCG
AAAACTGGCTGACGCGGATGTTCACGCTGGACTACGCGCTGTGGTTCGACCAGATGCTGCCGGGGCTCGAACGGCTCAAC
GTTCCAATTCCGCTCGGCGGCACCTCCAATCATTTCAAGATCGACGTGTTGCGCGAGCTGCACGCCTGGGATCCCTTCAA
CGTTACCGAAGATGCCGATCTCGGCGTTCGCCTGACTCAGAAGGGCTACCGCGTCGGCGTGGTCGATTCCACAACCTTCG
AGGAGGCGAGCTGCCACGCCGGCAATTGGATCAGACAGCGCTCGCGCTGGATGAAGGGCTACATGCAGACCTTCCTGGTA
CACACCAGGCGTCCGCTGCACCTGCTGCGCAGTATCGGTCCGCTCGGTTTTCTCGGCTTCGTCTTCTTCATCGGGGGCAC
CGTACTGGCCGGACTGATCAATCCGGTGTTCTGGTTGATGTTCGCGATCTGGCTGTTCGGGCTGGCCAATGGCTTCGATC
AGCTTTTTCCGGAGCCGCTGCTCTATCTCAGCCTGTTCAATCTGCTGGCCGGCAACGGCGCTTTCATCTTCCTCAACATG
CTGGCGCCGATCCGAAGAGGGTGGCTGAATCTCATTCCCTACAGCCTCACGGCGTTCGGCTATTGGGTGATGATCTCGAT
CGCGAGCTACCGCGGCCTCTGGCAGCTGTTGCGAAATCCGTTCTACTGGGAAAAGACCGACCACGGGGTGTCGAAGCATG
TCGTCCGAGAATTGGCGCTCGGACGGGAGACGACGACATGA

Upstream 100 bases:

>100_bases
ATCATCGGCGGGGTCTGGGTTCTCGTCACGCTCGGCCTGTTGTTCATTCTGCAACGCGTATACCGGCGCCGCGCCCTGAC
CACGGACAAGTGAGGGACCG

Downstream 100 bases:

>100_bases
GGCGGGCTCTCCCGATTCTGTCGATCGCGCTACTGACATTCGTCATCGTGCTCTTGATGGCGAAGCTAGCCGCGACTGCG
GGGCTGGTGCCGGAGGACGC

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 626; Mature: 626

Protein sequence:

>626_residues
MQPLSPSDLALGDLLVARRVLNLQQLDEAVGLAEAWHVRLGDAILSRAWIEPAVYYQAVAYHYELPFVDLIGDAPDPSLL
AADEAELYARRLTMPWRIRDGRLVIATAEPGPGVVLFARRRWGNAIEFVVASKFDIVWAVQTVFADALSHRAVYELAELD
PDMSAQQVFSPVQVLFGYGVATCLLVGLALAPIATLVAVNLILSLFYLGNFLFKGVLVSVGGARSVDRDEAIAIAARALS
DDDLPVFTVLVPMYREPKMLPMLARSLRQLDYPLGKLDIKLVLEADDHETIEVASTLGLEGIFEVIRVPPSHPQTKPKAC
NFALQFARGEFLVIYDAEDRPEPDQLRKVVATFRQAPANTACLQCRLSYFNARENWLTRMFTLDYALWFDQMLPGLERLN
VPIPLGGTSNHFKIDVLRELHAWDPFNVTEDADLGVRLTQKGYRVGVVDSTTFEEASCHAGNWIRQRSRWMKGYMQTFLV
HTRRPLHLLRSIGPLGFLGFVFFIGGTVLAGLINPVFWLMFAIWLFGLANGFDQLFPEPLLYLSLFNLLAGNGAFIFLNM
LAPIRRGWLNLIPYSLTAFGYWVMISIASYRGLWQLLRNPFYWEKTDHGVSKHVVRELALGRETTT

Sequences:

>Translated_626_residues
MQPLSPSDLALGDLLVARRVLNLQQLDEAVGLAEAWHVRLGDAILSRAWIEPAVYYQAVAYHYELPFVDLIGDAPDPSLL
AADEAELYARRLTMPWRIRDGRLVIATAEPGPGVVLFARRRWGNAIEFVVASKFDIVWAVQTVFADALSHRAVYELAELD
PDMSAQQVFSPVQVLFGYGVATCLLVGLALAPIATLVAVNLILSLFYLGNFLFKGVLVSVGGARSVDRDEAIAIAARALS
DDDLPVFTVLVPMYREPKMLPMLARSLRQLDYPLGKLDIKLVLEADDHETIEVASTLGLEGIFEVIRVPPSHPQTKPKAC
NFALQFARGEFLVIYDAEDRPEPDQLRKVVATFRQAPANTACLQCRLSYFNARENWLTRMFTLDYALWFDQMLPGLERLN
VPIPLGGTSNHFKIDVLRELHAWDPFNVTEDADLGVRLTQKGYRVGVVDSTTFEEASCHAGNWIRQRSRWMKGYMQTFLV
HTRRPLHLLRSIGPLGFLGFVFFIGGTVLAGLINPVFWLMFAIWLFGLANGFDQLFPEPLLYLSLFNLLAGNGAFIFLNM
LAPIRRGWLNLIPYSLTAFGYWVMISIASYRGLWQLLRNPFYWEKTDHGVSKHVVRELALGRETTT
>Mature_626_residues
MQPLSPSDLALGDLLVARRVLNLQQLDEAVGLAEAWHVRLGDAILSRAWIEPAVYYQAVAYHYELPFVDLIGDAPDPSLL
AADEAELYARRLTMPWRIRDGRLVIATAEPGPGVVLFARRRWGNAIEFVVASKFDIVWAVQTVFADALSHRAVYELAELD
PDMSAQQVFSPVQVLFGYGVATCLLVGLALAPIATLVAVNLILSLFYLGNFLFKGVLVSVGGARSVDRDEAIAIAARALS
DDDLPVFTVLVPMYREPKMLPMLARSLRQLDYPLGKLDIKLVLEADDHETIEVASTLGLEGIFEVIRVPPSHPQTKPKAC
NFALQFARGEFLVIYDAEDRPEPDQLRKVVATFRQAPANTACLQCRLSYFNARENWLTRMFTLDYALWFDQMLPGLERLN
VPIPLGGTSNHFKIDVLRELHAWDPFNVTEDADLGVRLTQKGYRVGVVDSTTFEEASCHAGNWIRQRSRWMKGYMQTFLV
HTRRPLHLLRSIGPLGFLGFVFFIGGTVLAGLINPVFWLMFAIWLFGLANGFDQLFPEPLLYLSLFNLLAGNGAFIFLNM
LAPIRRGWLNLIPYSLTAFGYWVMISIASYRGLWQLLRNPFYWEKTDHGVSKHVVRELALGRETTT

Specific function: Unknown

COG id: COG1215

COG function: function code M; Glycosyltransferases, probably involved in cell wall biogenesis

Gene ontology:

Cell location: Membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: NA

Molecular weight: Translated: 70358; Mature: 70358

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPLSPSDLALGDLLVARRVLNLQQLDEAVGLAEAWHVRLGDAILSRAWIEPAVYYQAVA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YHYELPFVDLIGDAPDPSLLAADEAELYARRLTMPWRIRDGRLVIATAEPGPGVVLFARR
HHCCCCHHHCCCCCCCCCEEECCHHHHHHHHCCCCEEEECCEEEEEECCCCCCEEEEEEC
RWGNAIEFVVASKFDIVWAVQTVFADALSHRAVYELAELDPDMSAQQVFSPVQVLFGYGV
CCCCCEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
ATCLLVGLALAPIATLVAVNLILSLFYLGNFLFKGVLVSVGGARSVDRDEAIAIAARALS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCC
DDDLPVFTVLVPMYREPKMLPMLARSLRQLDYPLGKLDIKLVLEADDHETIEVASTLGLE
CCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHCHH
GIFEVIRVPPSHPQTKPKACNFALQFARGEFLVIYDAEDRPEPDQLRKVVATFRQAPANT
HHHHHHHCCCCCCCCCCCHHHHHHEECCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCH
ACLQCRLSYFNARENWLTRMFTLDYALWFDQMLPGLERLNVPIPLGGTSNHFKIDVLREL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCEEHHHHHHH
HAWDPFNVTEDADLGVRLTQKGYRVGVVDSTTFEEASCHAGNWIRQRSRWMKGYMQTFLV
HCCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
HTRRPLHLLRSIGPLGFLGFVFFIGGTVLAGLINPVFWLMFAIWLFGLANGFDQLFPEPL
HCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHH
LYLSLFNLLAGNGAFIFLNMLAPIRRGWLNLIPYSLTAFGYWVMISIASYRGLWQLLRNP
HHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
FYWEKTDHGVSKHVVRELALGRETTT
CCCCCCCCCHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MQPLSPSDLALGDLLVARRVLNLQQLDEAVGLAEAWHVRLGDAILSRAWIEPAVYYQAVA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YHYELPFVDLIGDAPDPSLLAADEAELYARRLTMPWRIRDGRLVIATAEPGPGVVLFARR
HHCCCCHHHCCCCCCCCCEEECCHHHHHHHHCCCCEEEECCEEEEEECCCCCCEEEEEEC
RWGNAIEFVVASKFDIVWAVQTVFADALSHRAVYELAELDPDMSAQQVFSPVQVLFGYGV
CCCCCEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
ATCLLVGLALAPIATLVAVNLILSLFYLGNFLFKGVLVSVGGARSVDRDEAIAIAARALS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCC
DDDLPVFTVLVPMYREPKMLPMLARSLRQLDYPLGKLDIKLVLEADDHETIEVASTLGLE
CCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHCHH
GIFEVIRVPPSHPQTKPKACNFALQFARGEFLVIYDAEDRPEPDQLRKVVATFRQAPANT
HHHHHHHCCCCCCCCCCCHHHHHHEECCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCH
ACLQCRLSYFNARENWLTRMFTLDYALWFDQMLPGLERLNVPIPLGGTSNHFKIDVLREL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCEEHHHHHHH
HAWDPFNVTEDADLGVRLTQKGYRVGVVDSTTFEEASCHAGNWIRQRSRWMKGYMQTFLV
HCCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
HTRRPLHLLRSIGPLGFLGFVFFIGGTVLAGLINPVFWLMFAIWLFGLANGFDQLFPEPL
HCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHH
LYLSLFNLLAGNGAFIFLNMLAPIRRGWLNLIPYSLTAFGYWVMISIASYRGLWQLLRNP
HHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
FYWEKTDHGVSKHVVRELALGRETTT
CCCCCCCCCHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9341680; 9384377 [H]