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The map label for this gene is ydfH [H]

Identifier: 86751164

GI number: 86751164

Start: 4626574

End: 4627308

Strand: Direct

Name: ydfH [H]

Synonym: RPB_4056

Alternate gene names: 86751164

Gene position: 4626574-4627308 (Clockwise)

Preceding gene: 86751163

Following gene: 86751165

Centisome position: 86.78

GC content: 69.39

Gene sequence:

>735_bases
ATGACCATCGATCCGCTCGCGCTCGACCGCGGCGCCGGCGCCCGCAAAGCCGGTGCGATCGCAGCCGCGCCGGGACAGCC
CGCCGTGACCATCGGCAAGACCACCCGCGCCGAGGAATTGCGCCGCCTGCTCGCCGACGAGATCGTGCGCGGCGCGCTGC
CGCCCGGCGCGCCGCTCGACGAAACCGAACTCGCCCACCGCTTCAAGGTGTCGCGCACGCCGGTCCGCGAGGCGCTGCGC
CAATTGGTGACGAGCGGGCTCGTCGAGTCGCGGCCGCATCACGGCGCGGTGGTGGCCAAGCCGTCGTTCGAGCGACTGAG
CGGCATGTTCGAAGCGATGGCCGAGCTGGAGGCGATGTGCGCCGGCTTCGCCGCCGAGCGAATGACGCCGCTGGAGCGCC
GCGATCTCGAAGCGATCCACGACGAACTGCGGATGCTCAGTCACCACGGCAATCCGGAACGCTTCCACGACGTCAACGAA
CGCTTCCACAACGCGATCTATGCCGGCGCGCACAACGACTACATCGCCGAGATCACGCTGGCGACGCGGGTGCGGGTGCA
GCCGTTCCGGCGCGCGCAGTTTCGCAATCTCGGACGCCTCGCCAAATCGCAGGCCGAACACGACCGCGTCGTGGTGGCGA
TCATGCGCGGCGACCGCAATGCCGCTGCGGCCGCGATGCGCGGCCATATCGCGCTGGTGCGCGACGAATATGAAATCTAC
GCCGTCTCGGTGTGA

Upstream 100 bases:

>100_bases
GCAAGATCGGCCGCCAGATGCAGACCTGGGTGCGCTTTGCGGAAGGCTGGCGGATCGTCGCCGCCCATGTCAGCGTCATC
GATGAACCGCGGACCGGGGC

Downstream 100 bases:

>100_bases
CTGGAGCTTTTCGTGACTGAAACCATCGCCGACATTCTCGCCGCGCATCGCGCCGGCACCACGACGCCCGCGCAGACCAT
CGCGCGCTGCTATCAGCGCA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 243

Protein sequence:

>244_residues
MTIDPLALDRGAGARKAGAIAAAPGQPAVTIGKTTRAEELRRLLADEIVRGALPPGAPLDETELAHRFKVSRTPVREALR
QLVTSGLVESRPHHGAVVAKPSFERLSGMFEAMAELEAMCAGFAAERMTPLERRDLEAIHDELRMLSHHGNPERFHDVNE
RFHNAIYAGAHNDYIAEITLATRVRVQPFRRAQFRNLGRLAKSQAEHDRVVVAIMRGDRNAAAAAMRGHIALVRDEYEIY
AVSV

Sequences:

>Translated_244_residues
MTIDPLALDRGAGARKAGAIAAAPGQPAVTIGKTTRAEELRRLLADEIVRGALPPGAPLDETELAHRFKVSRTPVREALR
QLVTSGLVESRPHHGAVVAKPSFERLSGMFEAMAELEAMCAGFAAERMTPLERRDLEAIHDELRMLSHHGNPERFHDVNE
RFHNAIYAGAHNDYIAEITLATRVRVQPFRRAQFRNLGRLAKSQAEHDRVVVAIMRGDRNAAAAAMRGHIALVRDEYEIY
AVSV
>Mature_243_residues
TIDPLALDRGAGARKAGAIAAAPGQPAVTIGKTTRAEELRRLLADEIVRGALPPGAPLDETELAHRFKVSRTPVREALRQ
LVTSGLVESRPHHGAVVAKPSFERLSGMFEAMAELEAMCAGFAAERMTPLERRDLEAIHDELRMLSHHGNPERFHDVNER
FHNAIYAGAHNDYIAEITLATRVRVQPFRRAQFRNLGRLAKSQAEHDRVVVAIMRGDRNAAAAAMRGHIALVRDEYEIYA
VSV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=208, Percent_Identity=27.4038461538462, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI48994955, Length=224, Percent_Identity=27.6785714285714, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87081914, Length=201, Percent_Identity=27.8606965174129, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI87082149, Length=198, Percent_Identity=29.7979797979798, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26918; Mature: 26787

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIDPLALDRGAGARKAGAIAAAPGQPAVTIGKTTRAEELRRLLADEIVRGALPPGAPLD
CCCCCCCCCCCCCCCCCCCEEECCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCC
ETELAHRFKVSRTPVREALRQLVTSGLVESRPHHGAVVAKPSFERLSGMFEAMAELEAMC
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHH
AGFAAERMTPLERRDLEAIHDELRMLSHHGNPERFHDVNERFHNAIYAGAHNDYIAEITL
HHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEECCCCCCEEEEEEE
ATRVRVQPFRRAQFRNLGRLAKSQAEHDRVVVAIMRGDRNAAAAAMRGHIALVRDEYEIY
HHHHHHCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHCCEEEEECCEEEE
AVSV
EEEC
>Mature Secondary Structure 
TIDPLALDRGAGARKAGAIAAAPGQPAVTIGKTTRAEELRRLLADEIVRGALPPGAPLD
CCCCCCCCCCCCCCCCCCEEECCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCC
ETELAHRFKVSRTPVREALRQLVTSGLVESRPHHGAVVAKPSFERLSGMFEAMAELEAMC
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHH
AGFAAERMTPLERRDLEAIHDELRMLSHHGNPERFHDVNERFHNAIYAGAHNDYIAEITL
HHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEECCCCCCEEEEEEE
ATRVRVQPFRRAQFRNLGRLAKSQAEHDRVVVAIMRGDRNAAAAAMRGHIALVRDEYEIY
HHHHHHCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHCCEEEEECCEEEE
AVSV
EEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]