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The map label for this gene is ddpB [H]

Identifier: 86751158

GI number: 86751158

Start: 4620409

End: 4621422

Strand: Direct

Name: ddpB [H]

Synonym: RPB_4050

Alternate gene names: 86751158

Gene position: 4620409-4621422 (Clockwise)

Preceding gene: 86751157

Following gene: 86751159

Centisome position: 86.66

GC content: 65.68

Gene sequence:

>1014_bases
ATGCTCACCATGATCGGCAAGCGTCTGATGTTCGCGATTCCGAGCCTGATCGGCGTCGTGATCGTCACCTTTCTGCTGAC
CCGGGCGCTGCCCGGCGATCCGGCCGCTTACTTCGCCGGGCCCGCTGCCAGCAAGGAGGCGATCGAGCAGATCCGGCAGA
AGCTCGGCCTCGACAAGACGCTGGCCGAGCAATTCGTGCGCTACACCACCGAACTCGCCCAGGGCGATCTCGGCCAGTCG
CTGACCACCGGACAGCCGGTCGCCACCGAGATCCGCAACCGGCTGCCGGCCTCCGCCGAGCTCACCTTGCTCGGCCTGAT
GCTGGCGATCGTGATCGCGATCCCGCTCGGCATCATGGCGGCGACGCGACCGGGCTCGTGGATCGATCACATCTGCCGCG
TCACCACCACGGCCGGCGTCTCGCTGCCGGTGTTCTTCACCGGGCTGCTGCTGGTCTATGTGTTTTACTTCAAGCTCGGC
TGGTCGCCGGCGCCGCTCGGCCGGCTCGACGTGTTCTACTCGGCGCCGCCGAACGTCACCGGCTTCTATCTGATCGACAG
CCTGATCGCGCGCGAATTCGAGACCTTCCGATCGGCGTTGAGCCAATTGCTGCTTCCGGCATTGACGCTGGCGATCTTCT
CGCTGGCGCCGATCGCGCGCATGACGCGGGCCTCGATGCTGGCGATCCTGTCGTCCGATTTCGTCCGCACCGCGCGCGCC
TCCGGCCTGTCGCCCGGCAAGGTGACGATGACCTACGCCTTCCGCAACGCGATGCTGCCGGTGATCACCACGCTCAGCAT
GGTGTTCTCGTTCCTGCTCGGCGCCAATGTGCTGGTCGAGAAGGTGTTCGCCTGGCCGGGCATCGGCTCCTACGCGGTCG
AGGCGCTGATCTCGTCGGACTTCGCCCCGGTGCAGGGCTTCGTGCTCACCATGGCGATCATGTATGTGCTGCTGAACCTG
GTGATCGACATCCTCTACGGCGTCATCGATCCGCGCGTGCGGCTGGAAGGATAG

Upstream 100 bases:

>100_bases
ATGCGGCGTCAAGCAGTGCCTCTGAACCATCCTTCGAGGCGCGCCGCGAAGGCGGCGCGCACCTCGATGACGTCCTGCAT
GTGGCTGGGAGCCTGAAGCG

Downstream 100 bases:

>100_bases
TGGACATGAGCAGCGTCGCGCCCCCGATCACCGAGCCCGCCAAGCCCTCAACGGCCGCAAAGCCCGTGCGGCGCTCCGGC
CTGGTCGAAATGATCGCGCA

Product: binding-protein dependent transport system inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 337

Protein sequence:

>337_residues
MLTMIGKRLMFAIPSLIGVVIVTFLLTRALPGDPAAYFAGPAASKEAIEQIRQKLGLDKTLAEQFVRYTTELAQGDLGQS
LTTGQPVATEIRNRLPASAELTLLGLMLAIVIAIPLGIMAATRPGSWIDHICRVTTTAGVSLPVFFTGLLLVYVFYFKLG
WSPAPLGRLDVFYSAPPNVTGFYLIDSLIAREFETFRSALSQLLLPALTLAIFSLAPIARMTRASMLAILSSDFVRTARA
SGLSPGKVTMTYAFRNAMLPVITTLSMVFSFLLGANVLVEKVFAWPGIGSYAVEALISSDFAPVQGFVLTMAIMYVLLNL
VIDILYGVIDPRVRLEG

Sequences:

>Translated_337_residues
MLTMIGKRLMFAIPSLIGVVIVTFLLTRALPGDPAAYFAGPAASKEAIEQIRQKLGLDKTLAEQFVRYTTELAQGDLGQS
LTTGQPVATEIRNRLPASAELTLLGLMLAIVIAIPLGIMAATRPGSWIDHICRVTTTAGVSLPVFFTGLLLVYVFYFKLG
WSPAPLGRLDVFYSAPPNVTGFYLIDSLIAREFETFRSALSQLLLPALTLAIFSLAPIARMTRASMLAILSSDFVRTARA
SGLSPGKVTMTYAFRNAMLPVITTLSMVFSFLLGANVLVEKVFAWPGIGSYAVEALISSDFAPVQGFVLTMAIMYVLLNL
VIDILYGVIDPRVRLEG
>Mature_337_residues
MLTMIGKRLMFAIPSLIGVVIVTFLLTRALPGDPAAYFAGPAASKEAIEQIRQKLGLDKTLAEQFVRYTTELAQGDLGQS
LTTGQPVATEIRNRLPASAELTLLGLMLAIVIAIPLGIMAATRPGSWIDHICRVTTTAGVSLPVFFTGLLLVYVFYFKLG
WSPAPLGRLDVFYSAPPNVTGFYLIDSLIAREFETFRSALSQLLLPALTLAIFSLAPIARMTRASMLAILSSDFVRTARA
SGLSPGKVTMTYAFRNAMLPVITTLSMVFSFLLGANVLVEKVFAWPGIGSYAVEALISSDFAPVQGFVLTMAIMYVLLNL
VIDILYGVIDPRVRLEG

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787761, Length=316, Percent_Identity=46.5189873417722, Blast_Score=250, Evalue=1e-67,
Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=39.6449704142012, Blast_Score=248, Evalue=4e-67,
Organism=Escherichia coli, GI1787053, Length=336, Percent_Identity=37.202380952381, Blast_Score=234, Evalue=8e-63,
Organism=Escherichia coli, GI1789888, Length=337, Percent_Identity=32.3442136498516, Blast_Score=175, Evalue=3e-45,
Organism=Escherichia coli, GI1787550, Length=281, Percent_Identity=30.9608540925267, Blast_Score=155, Evalue=3e-39,
Organism=Escherichia coli, GI1787497, Length=336, Percent_Identity=28.8690476190476, Blast_Score=151, Evalue=5e-38,
Organism=Escherichia coli, GI1788504, Length=375, Percent_Identity=26.6666666666667, Blast_Score=128, Evalue=6e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36462; Mature: 36462

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTMIGKRLMFAIPSLIGVVIVTFLLTRALPGDPAAYFAGPAASKEAIEQIRQKLGLDKT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHHCCCHH
LAEQFVRYTTELAQGDLGQSLTTGQPVATEIRNRLPASAELTLLGLMLAIVIAIPLGIMA
HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
ATRPGSWIDHICRVTTTAGVSLPVFFTGLLLVYVFYFKLGWSPAPLGRLDVFYSAPPNVT
CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCH
GFYLIDSLIAREFETFRSALSQLLLPALTLAIFSLAPIARMTRASMLAILSSDFVRTARA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SGLSPGKVTMTYAFRNAMLPVITTLSMVFSFLLGANVLVEKVFAWPGIGSYAVEALISSD
CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
FAPVQGFVLTMAIMYVLLNLVIDILYGVIDPRVRLEG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECC
>Mature Secondary Structure
MLTMIGKRLMFAIPSLIGVVIVTFLLTRALPGDPAAYFAGPAASKEAIEQIRQKLGLDKT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHHCCCHH
LAEQFVRYTTELAQGDLGQSLTTGQPVATEIRNRLPASAELTLLGLMLAIVIAIPLGIMA
HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
ATRPGSWIDHICRVTTTAGVSLPVFFTGLLLVYVFYFKLGWSPAPLGRLDVFYSAPPNVT
CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCH
GFYLIDSLIAREFETFRSALSQLLLPALTLAIFSLAPIARMTRASMLAILSSDFVRTARA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SGLSPGKVTMTYAFRNAMLPVITTLSMVFSFLLGANVLVEKVFAWPGIGSYAVEALISSD
CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
FAPVQGFVLTMAIMYVLLNLVIDILYGVIDPRVRLEG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]