| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is bphB [H]
Identifier: 86751142
GI number: 86751142
Start: 4603290
End: 4605617
Strand: Direct
Name: bphB [H]
Synonym: RPB_4034
Alternate gene names: 86751142
Gene position: 4603290-4605617 (Clockwise)
Preceding gene: 86751132
Following gene: 86751143
Centisome position: 86.34
GC content: 68.21
Gene sequence:
>2328_bases ATGAACTCGGGCATTGACAATTCGGCCGAGTTGATAGTCGCAGAATTCGAGGCATTCGGCCAGTCCGGATGCGAGCGCGA AGCGATTCATCTGCCCGGTTCCATCCAGCCGCACGGCGCCCTGCTGGCGCTGGCGCCGGACGATCTGCGGATCGTCCACG CCAGCGGCGATACGACGTTGCTGCCGGGCGCGCCGGCCGGACCGCTGCCGGGCCGCCACGCCACCGAGATCCTGTCGTCC GACCAGATCGCGCGGTTGCGCGCCCTGCTCGGCCCGGATCGCAGGATCGAGCGGCCGCTGCACGCCTTCGCGTTGACCGC GCCCGACGCCACGCCGATCGATGTCGTGGTGCATCAGTCGTCGGGCCTGCTGGTTCTGGAATTCGATCCGCGCCGCGAGC CAGCGCCGGAGAATTCGCTGGCGCTGGTGCAGTCGATGATCCGGCACGTGCAGCGCGCCGGAACGGTGCAGGCGTTCTGC GAAGCGATCGTCGCGGAGCTCCGCGCGGTCACCGGCTTCGAGCGGGTGATGATCTATCGCTTCAGCGCCGACGACAGCGG CGAAGTGATCGCGGAATCATGCGCAGCCGGCATCGAGAGTTTCCTAGGGCTGCGCTATCCGGAATCGGACATCCCGAAGC AGGCCCGCGCGCTGTATCTCACCAACTGGATCCGCGCGATTCCCGATGCGCGCTACGCGCCGGCGCCGATCACGCCCGCC GTCAATCCGCGCACCGGCCTGCGGCTCGACCTCAGCCAGAGCGTGATCCGCAGCGTGTCGCCGGCGCACCGGGTGTATCT GGCGCATATGGGCGTGGTGGCGTCGATGTCGCTGTCGATGATCCAGCACGGCCGGTTGTGGGGGCTGATCGCCTGCCATC ACAGCGCGCCGCGCTATCTGCCGTACCGGATGCGCGAGGCGTGCGAGCTGTTCGCCGAGATGGCGTCGTCGCAGCTCGAG GCCAAGGTCGCCGCCGAACAGCTCGAGGCGCGGCTGCGCAGCACCCGGATCCACGAAGAGCTGGTGACGCGGATGAGCCA GGAATCCGACCTCGCCGAAGGTCTGATCCGGTTTCATCCCAATCTACTCGACTTCATCCCGGGGACCGGCGTCGCGCTGT GGATCGACGGTCAGTTCACCGGCCTCGGCCGCACCCCGGACGCCGCCCAGACCGAAGCGCTGATCGGCTGGTTGACGGCC AACTCGAACGACGGCGTGTTCCACACCGACGGCCTGCCGCTGATCTATCCGCCGGCGAAGGCCTATGCCGATTGCGCCAG CGGCCTGATGGCGCTGTCGCTGTCGAAATCGCCGCGCGACTACGTGCTGTGGTTCCGGCCCGAAGTGGTGCGCACCGTCA CCTGGGCCGGCAATCCGAACAAGCCGGTCGGCGTCGGCCCCGGCGGCGAATTTCTGACGCCGCGCCGCAGCTTCGCCGCG TGGCAGGAATCGGTGCGACTCCATGCCGAGCCGTGGCGCGCCTCCGAGATCGAGGCCGCGCACCGACTGCGGCTGTCGCT GCTCGAAGTGGTGCTGCGGCGGATCGACGGCATCGCCCGCGAACGCCGATCCGCGCGGCTGCTGCAGGAACAATTGATGC GGCAGGTCGAACTCGGGCTGCGCCGGTCGCACGACGTCGCCCAGACGCTCCAGGAAGAGACCCGGCGGCGAGTTTCGGTC GAGGCCGACCTGTCGCAGGTGCTGCGCCGCACGGTCGAGGATCAGGAAGCCGAGCGGCTGCGGATCGCGCGCGAGCTGCA CGATACGCTCGGCCAGTCGCTGACGTTGCTGCAACTCGGCTTCGAAAATCTCGGGCAGGTCGCGCCGGACAACGGCGAAT TGCAGAACCGCATCGCCGGCATGAGGAGCCTCACCGCCGATATCGGCCAGCAGGTCAACCGGCTGGCGTGGGAGATCCGG CCCACCGCGCTCGACGATCTCGGCATCCAGACCGCGATCCAGCATCTGCTCGACGCCTGGAGCGAGAAGGCGCAGGTGCA GTTCGACCTGCACATGACGCTCGGCGACCGCCGACTTCCGCCGGCGATCGAGACCACCCTGTATCGCGTGCTGCAGGAAG CGCTGACCAACATCGTCCGCCACGCCGCCGCGAGCCATGTCAGCGTCATCCTCCGATTGTCGGACCAGCAGGTGACGATG GTGGTCGAGGACGACGGCCGCGGCTTCGTCAATCCCGATGCCGGTCTCCCGCCGGAGCGGCTCGGCCTGCTCGGCATTCG CGAGCGGCTGACGCTGGTCCGCGGCTCGCTCGAAATCGAATCCGCGCCCGGCAAGGGCACCGCTCTATACGCACGAATTC CGTTGTAA
Upstream 100 bases:
>100_bases CTTTGTCAATTTAACATGACACTGGGGGGTGTCCGTGTCATACCGGACATCCTCAAGCCGGTCCGCCGACTCCCGGACAC GGAAAATTGAGTAAAACGTG
Downstream 100 bases:
>100_bases AGCATGGAAGCACATCCGATGGACCAGCAGGCCCCCTCCCGATTGCGCGTCTTCCTCGCCGACGATCATCCGGTCGTGCT CAGCGGCATGAAGGCGCTCG
Product: multi-sensor signal transduction histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 775; Mature: 775
Protein sequence:
>775_residues MNSGIDNSAELIVAEFEAFGQSGCEREAIHLPGSIQPHGALLALAPDDLRIVHASGDTTLLPGAPAGPLPGRHATEILSS DQIARLRALLGPDRRIERPLHAFALTAPDATPIDVVVHQSSGLLVLEFDPRREPAPENSLALVQSMIRHVQRAGTVQAFC EAIVAELRAVTGFERVMIYRFSADDSGEVIAESCAAGIESFLGLRYPESDIPKQARALYLTNWIRAIPDARYAPAPITPA VNPRTGLRLDLSQSVIRSVSPAHRVYLAHMGVVASMSLSMIQHGRLWGLIACHHSAPRYLPYRMREACELFAEMASSQLE AKVAAEQLEARLRSTRIHEELVTRMSQESDLAEGLIRFHPNLLDFIPGTGVALWIDGQFTGLGRTPDAAQTEALIGWLTA NSNDGVFHTDGLPLIYPPAKAYADCASGLMALSLSKSPRDYVLWFRPEVVRTVTWAGNPNKPVGVGPGGEFLTPRRSFAA WQESVRLHAEPWRASEIEAAHRLRLSLLEVVLRRIDGIARERRSARLLQEQLMRQVELGLRRSHDVAQTLQEETRRRVSV EADLSQVLRRTVEDQEAERLRIARELHDTLGQSLTLLQLGFENLGQVAPDNGELQNRIAGMRSLTADIGQQVNRLAWEIR PTALDDLGIQTAIQHLLDAWSEKAQVQFDLHMTLGDRRLPPAIETTLYRVLQEALTNIVRHAAASHVSVILRLSDQQVTM VVEDDGRGFVNPDAGLPPERLGLLGIRERLTLVRGSLEIESAPGKGTALYARIPL
Sequences:
>Translated_775_residues MNSGIDNSAELIVAEFEAFGQSGCEREAIHLPGSIQPHGALLALAPDDLRIVHASGDTTLLPGAPAGPLPGRHATEILSS DQIARLRALLGPDRRIERPLHAFALTAPDATPIDVVVHQSSGLLVLEFDPRREPAPENSLALVQSMIRHVQRAGTVQAFC EAIVAELRAVTGFERVMIYRFSADDSGEVIAESCAAGIESFLGLRYPESDIPKQARALYLTNWIRAIPDARYAPAPITPA VNPRTGLRLDLSQSVIRSVSPAHRVYLAHMGVVASMSLSMIQHGRLWGLIACHHSAPRYLPYRMREACELFAEMASSQLE AKVAAEQLEARLRSTRIHEELVTRMSQESDLAEGLIRFHPNLLDFIPGTGVALWIDGQFTGLGRTPDAAQTEALIGWLTA NSNDGVFHTDGLPLIYPPAKAYADCASGLMALSLSKSPRDYVLWFRPEVVRTVTWAGNPNKPVGVGPGGEFLTPRRSFAA WQESVRLHAEPWRASEIEAAHRLRLSLLEVVLRRIDGIARERRSARLLQEQLMRQVELGLRRSHDVAQTLQEETRRRVSV EADLSQVLRRTVEDQEAERLRIARELHDTLGQSLTLLQLGFENLGQVAPDNGELQNRIAGMRSLTADIGQQVNRLAWEIR PTALDDLGIQTAIQHLLDAWSEKAQVQFDLHMTLGDRRLPPAIETTLYRVLQEALTNIVRHAAASHVSVILRLSDQQVTM VVEDDGRGFVNPDAGLPPERLGLLGIRERLTLVRGSLEIESAPGKGTALYARIPL >Mature_775_residues MNSGIDNSAELIVAEFEAFGQSGCEREAIHLPGSIQPHGALLALAPDDLRIVHASGDTTLLPGAPAGPLPGRHATEILSS DQIARLRALLGPDRRIERPLHAFALTAPDATPIDVVVHQSSGLLVLEFDPRREPAPENSLALVQSMIRHVQRAGTVQAFC EAIVAELRAVTGFERVMIYRFSADDSGEVIAESCAAGIESFLGLRYPESDIPKQARALYLTNWIRAIPDARYAPAPITPA VNPRTGLRLDLSQSVIRSVSPAHRVYLAHMGVVASMSLSMIQHGRLWGLIACHHSAPRYLPYRMREACELFAEMASSQLE AKVAAEQLEARLRSTRIHEELVTRMSQESDLAEGLIRFHPNLLDFIPGTGVALWIDGQFTGLGRTPDAAQTEALIGWLTA NSNDGVFHTDGLPLIYPPAKAYADCASGLMALSLSKSPRDYVLWFRPEVVRTVTWAGNPNKPVGVGPGGEFLTPRRSFAA WQESVRLHAEPWRASEIEAAHRLRLSLLEVVLRRIDGIARERRSARLLQEQLMRQVELGLRRSHDVAQTLQEETRRRVSV EADLSQVLRRTVEDQEAERLRIARELHDTLGQSLTLLQLGFENLGQVAPDNGELQNRIAGMRSLTADIGQQVNRLAWEIR PTALDDLGIQTAIQHLLDAWSEKAQVQFDLHMTLGDRRLPPAIETTLYRVLQEALTNIVRHAAASHVSVILRLSDQQVTM VVEDDGRGFVNPDAGLPPERLGLLGIRERLTLVRGSLEIESAPGKGTALYARIPL
Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]
COG id: COG4251
COG function: function code T; Bacteriophytochrome (light-regulated signal transduction histidine kinase)
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
Organism=Escherichia coli, GI87082311, Length=231, Percent_Identity=32.4675324675325, Blast_Score=92, Evalue=2e-19, Organism=Escherichia coli, GI1788812, Length=192, Percent_Identity=29.6875, Blast_Score=69, Evalue=8e-13, Organism=Escherichia coli, GI1787474, Length=199, Percent_Identity=27.1356783919598, Blast_Score=68, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003018 - InterPro: IPR013654 - InterPro: IPR016132 - InterPro: IPR001294 - InterPro: IPR013515 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 85395; Mature: 85395
Theoretical pI: Translated: 6.41; Mature: 6.41
Prosite motif: PS50109 HIS_KIN ; PS50046 PHYTOCHROME_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSGIDNSAELIVAEFEAFGQSGCEREAIHLPGSIQPHGALLALAPDDLRIVHASGDTTL CCCCCCCCHHEEEEHHHHHCCCCCCCCEEECCCCCCCCCEEEEECCCCEEEEECCCCCEE LPGAPAGPLPGRHATEILSSDQIARLRALLGPDRRIERPLHAFALTAPDATPIDVVVHQS CCCCCCCCCCCCHHHHHHCCHHHHHHHHHHCCCHHHHCCHHHEEEECCCCCCEEEEEECC SGLLVLEFDPRREPAPENSLALVQSMIRHVQRAGTVQAFCEAIVAELRAVTGFERVMIYR CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEEE FSADDSGEVIAESCAAGIESFLGLRYPESDIPKQARALYLTNWIRAIPDARYAPAPITPA ECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC VNPRTGLRLDLSQSVIRSVSPAHRVYLAHMGVVASMSLSMIQHGRLWGLIACHHSAPRYL CCCCCCCEECHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCC PYRMREACELFAEMASSQLEAKVAAEQLEARLRSTRIHEELVTRMSQESDLAEGLIRFHP CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC NLLDFIPGTGVALWIDGQFTGLGRTPDAAQTEALIGWLTANSNDGVFHTDGLPLIYPPAK CHHHHCCCCCEEEEECCEEECCCCCCCCHHHHHEEEEEEECCCCCEEEECCCCEEECCHH AYADCASGLMALSLSKSPRDYVLWFRPEVVRTVTWAGNPNKPVGVGPGGEFLTPRRSFAA HHHHHHCCCEEEEECCCCCCEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHH WQESVRLHAEPWRASEIEAAHRLRLSLLEVVLRRIDGIARERRSARLLQEQLMRQVELGL HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RRSHDVAQTLQEETRRRVSVEADLSQVLRRTVEDQEAERLRIARELHDTLGQSLTLLQLG HCCHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHC FENLGQVAPDNGELQNRIAGMRSLTADIGQQVNRLAWEIRPTALDDLGIQTAIQHLLDAW HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHCCHHHHHHHHHHHH SEKAQVQFDLHMTLGDRRLPPAIETTLYRVLQEALTNIVRHAAASHVSVILRLSDQQVTM CCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCEEEE VVEDDGRGFVNPDAGLPPERLGLLGIRERLTLVRGSLEIESAPGKGTALYARIPL EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEECCCCCCCEEEEECCC >Mature Secondary Structure MNSGIDNSAELIVAEFEAFGQSGCEREAIHLPGSIQPHGALLALAPDDLRIVHASGDTTL CCCCCCCCHHEEEEHHHHHCCCCCCCCEEECCCCCCCCCEEEEECCCCEEEEECCCCCEE LPGAPAGPLPGRHATEILSSDQIARLRALLGPDRRIERPLHAFALTAPDATPIDVVVHQS CCCCCCCCCCCCHHHHHHCCHHHHHHHHHHCCCHHHHCCHHHEEEECCCCCCEEEEEECC SGLLVLEFDPRREPAPENSLALVQSMIRHVQRAGTVQAFCEAIVAELRAVTGFERVMIYR CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEEE FSADDSGEVIAESCAAGIESFLGLRYPESDIPKQARALYLTNWIRAIPDARYAPAPITPA ECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC VNPRTGLRLDLSQSVIRSVSPAHRVYLAHMGVVASMSLSMIQHGRLWGLIACHHSAPRYL CCCCCCCEECHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCC PYRMREACELFAEMASSQLEAKVAAEQLEARLRSTRIHEELVTRMSQESDLAEGLIRFHP CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC NLLDFIPGTGVALWIDGQFTGLGRTPDAAQTEALIGWLTANSNDGVFHTDGLPLIYPPAK CHHHHCCCCCEEEEECCEEECCCCCCCCHHHHHEEEEEEECCCCCEEEECCCCEEECCHH AYADCASGLMALSLSKSPRDYVLWFRPEVVRTVTWAGNPNKPVGVGPGGEFLTPRRSFAA HHHHHHCCCEEEEECCCCCCEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHH WQESVRLHAEPWRASEIEAAHRLRLSLLEVVLRRIDGIARERRSARLLQEQLMRQVELGL HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RRSHDVAQTLQEETRRRVSVEADLSQVLRRTVEDQEAERLRIARELHDTLGQSLTLLQLG HCCHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHC FENLGQVAPDNGELQNRIAGMRSLTADIGQQVNRLAWEIRPTALDDLGIQTAIQHLLDAW HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHCCHHHHHHHHHHHH SEKAQVQFDLHMTLGDRRLPPAIETTLYRVLQEALTNIVRHAAASHVSVILRLSDQQVTM CCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCEEEE VVEDDGRGFVNPDAGLPPERLGLLGIRERLTLVRGSLEIESAPGKGTALYARIPL EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEECCCCCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11759840 [H]