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The map label for this gene is cbbR [H]

Identifier: 86751076

GI number: 86751076

Start: 4532446

End: 4533414

Strand: Direct

Name: cbbR [H]

Synonym: RPB_3968

Alternate gene names: 86751076

Gene position: 4532446-4533414 (Clockwise)

Preceding gene: 86751069

Following gene: 86751091

Centisome position: 85.01

GC content: 65.43

Gene sequence:

>969_bases
ATGAGTCGTCAGTTCAAAGCCGTGTCGATCCGACAATTGCGCGCGCTTGCTGCGCTGGCCGAAACCGGCAGCATCACCGC
GGCGGCGAACAGGCTGCATCTGACCCAGCCGGCGGTGACCCTGCAACTACGCAACCTGCAATCGCTGGCCGACATTCCGC
TGATCCAGCGCAGGAGCGACGGCATGCAGCTCACCGATGCCGGCCTGGAGGTGTTGGCGCTGTGCGAGCGGATCGAGGCG
GCGATCTCCGCCTGCGAGACTTCGCTGGACATGATCGCCGGCAAGACCGCTGGGCGGATTTCGATCGGGGCCGTGTCCAC
GGCGAAATATTTCGTTCCGTTCGCGATCTCCAGCTTTCTCAAGCGCCATCCGAAGATCGACGTGCGGCTGTCCATCGGCA
ACCGCCAGGACATCGGCGCCGCGTTGCGCGGCTACGATCTCGACATCGCGATCATGGGCCGCCCCCCGGTCGATCTCGAC
GTCGAGACCCATCTGATCGGCGATCACCCGCACGTCATCATCGCGCCGACGGCGCATCGTCTGGCGCGAAAGCAGGATAT
CGCGCTCGCCGAACTGGCCGACGAGACTTTCCTCACCCGCGAGCCGGGTTCGGGGACCCGCAGCCTGATGGAGCAACTCT
TCGGCAACGCCGGGATCAGGCCGAACATCGGCATGGAGATGGCCAGCAACGAGACCATCAAGCAGGCGGTGATCGCCGGC
CTCGGCATGGCATTTCTCTCCGCCCACACGGTCGCGACCGAGCTCGACGAACGGCGATTGGTGATCCTCGATGTGGTCGG
TCTGCCGGTCGTACGGCAATGGTTCGTGGTGACGCGCAAAGACAAGGTGCTGCTGCCTCCGGCCCGCGCGATGCTCGACT
TTCTCAAGGCCGAGGCTTCGCACTTCCTGCCGCGCACCGACCGGCGGATGCGGCTGACGCGCCCGTCGACACGCGGCAAG
CGCGACTGA

Upstream 100 bases:

>100_bases
CCGCCGGGGAGGAACCCTCGAAACTCTACTTGATCAATGTTGACCGCACCGACCGAATAATGGAAAATTCAACATTGTCA
CCGTCAGCAAAGTATTCTTT

Downstream 100 bases:

>100_bases
GCGCAACACGGCCAGTTTCGACCCCACGCCTCACCATCGACTTCGTCGTGTGCGTCGAACGCAAAACGCGCGCCTCGCGG
CGCGCGTCTGCTTCCGAAAC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: RuBisCO operon transcriptional regulator [H]

Number of amino acids: Translated: 322; Mature: 321

Protein sequence:

>322_residues
MSRQFKAVSIRQLRALAALAETGSITAAANRLHLTQPAVTLQLRNLQSLADIPLIQRRSDGMQLTDAGLEVLALCERIEA
AISACETSLDMIAGKTAGRISIGAVSTAKYFVPFAISSFLKRHPKIDVRLSIGNRQDIGAALRGYDLDIAIMGRPPVDLD
VETHLIGDHPHVIIAPTAHRLARKQDIALAELADETFLTREPGSGTRSLMEQLFGNAGIRPNIGMEMASNETIKQAVIAG
LGMAFLSAHTVATELDERRLVILDVVGLPVVRQWFVVTRKDKVLLPPARAMLDFLKAEASHFLPRTDRRMRLTRPSTRGK
RD

Sequences:

>Translated_322_residues
MSRQFKAVSIRQLRALAALAETGSITAAANRLHLTQPAVTLQLRNLQSLADIPLIQRRSDGMQLTDAGLEVLALCERIEA
AISACETSLDMIAGKTAGRISIGAVSTAKYFVPFAISSFLKRHPKIDVRLSIGNRQDIGAALRGYDLDIAIMGRPPVDLD
VETHLIGDHPHVIIAPTAHRLARKQDIALAELADETFLTREPGSGTRSLMEQLFGNAGIRPNIGMEMASNETIKQAVIAG
LGMAFLSAHTVATELDERRLVILDVVGLPVVRQWFVVTRKDKVLLPPARAMLDFLKAEASHFLPRTDRRMRLTRPSTRGK
RD
>Mature_321_residues
SRQFKAVSIRQLRALAALAETGSITAAANRLHLTQPAVTLQLRNLQSLADIPLIQRRSDGMQLTDAGLEVLALCERIEAA
ISACETSLDMIAGKTAGRISIGAVSTAKYFVPFAISSFLKRHPKIDVRLSIGNRQDIGAALRGYDLDIAIMGRPPVDLDV
ETHLIGDHPHVIIAPTAHRLARKQDIALAELADETFLTREPGSGTRSLMEQLFGNAGIRPNIGMEMASNETIKQAVIAGL
GMAFLSAHTVATELDERRLVILDVVGLPVVRQWFVVTRKDKVLLPPARAMLDFLKAEASHFLPRTDRRMRLTRPSTRGKR
D

Specific function: Transcriptional activator for the cbb operon (cbbLSXFP) for RuBisCO and other Calvin cycle genes. Binds specifically to two binding sites in the cbbR-cbbL intergenic region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=293, Percent_Identity=27.9863481228669, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1788748, Length=296, Percent_Identity=23.9864864864865, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787879, Length=260, Percent_Identity=28.0769230769231, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI157672245, Length=220, Percent_Identity=27.7272727272727, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI145693105, Length=292, Percent_Identity=24.3150684931507, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788887, Length=251, Percent_Identity=26.6932270916335, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787601, Length=297, Percent_Identity=23.5690235690236, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1790262, Length=311, Percent_Identity=25.4019292604502, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787530, Length=256, Percent_Identity=24.609375, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1790399, Length=261, Percent_Identity=25.2873563218391, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788296, Length=244, Percent_Identity=25, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI2367136, Length=253, Percent_Identity=24.901185770751, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787806, Length=273, Percent_Identity=23.8095238095238, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1789204, Length=249, Percent_Identity=23.2931726907631, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1787589, Length=274, Percent_Identity=27.007299270073, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI87081904, Length=293, Percent_Identity=23.2081911262799, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35259; Mature: 35127

Theoretical pI: Translated: 10.45; Mature: 10.45

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRQFKAVSIRQLRALAALAETGSITAAANRLHLTQPAVTLQLRNLQSLADIPLIQRRSD
CCCCCHHHHHHHHHHHHHHHHCCCEEEHHCEEEECCCHHEEEHHHHHHHHCCCHHEECCC
GMQLTDAGLEVLALCERIEAAISACETSLDMIAGKTAGRISIGAVSTAKYFVPFAISSFL
CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECEECHHHHHHHHHHHHHH
KRHPKIDVRLSIGNRQDIGAALRGYDLDIAIMGRPPVDLDVETHLIGDHPHVIIAPTAHR
HHCCCEEEEEECCCCHHHHHHHCCCCEEEEEECCCCCCCCCEEEEECCCCCEEECCCHHH
LARKQDIALAELADETFLTREPGSGTRSLMEQLFGNAGIRPNIGMEMASNETIKQAVIAG
HHHHHCCHHHHHHCCHHEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHH
LGMAFLSAHTVATELDERRLVILDVVGLPVVRQWFVVTRKDKVLLPPARAMLDFLKAEAS
HHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHEEECCCCEECCCHHHHHHHHHHHHH
HFLPRTDRRMRLTRPSTRGKRD
HCCCCCCCCEEECCCCCCCCCC
>Mature Secondary Structure 
SRQFKAVSIRQLRALAALAETGSITAAANRLHLTQPAVTLQLRNLQSLADIPLIQRRSD
CCCCHHHHHHHHHHHHHHHHCCCEEEHHCEEEECCCHHEEEHHHHHHHHCCCHHEECCC
GMQLTDAGLEVLALCERIEAAISACETSLDMIAGKTAGRISIGAVSTAKYFVPFAISSFL
CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECEECHHHHHHHHHHHHHH
KRHPKIDVRLSIGNRQDIGAALRGYDLDIAIMGRPPVDLDVETHLIGDHPHVIIAPTAHR
HHCCCEEEEEECCCCHHHHHHHCCCCEEEEEECCCCCCCCCEEEEECCCCCEEECCCHHH
LARKQDIALAELADETFLTREPGSGTRSLMEQLFGNAGIRPNIGMEMASNETIKQAVIAG
HHHHHCCHHHHHHCCHHEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHH
LGMAFLSAHTVATELDERRLVILDVVGLPVVRQWFVVTRKDKVLLPPARAMLDFLKAEAS
HHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHEEECCCCEECCCHHHHHHHHHHHHH
HFLPRTDRRMRLTRPSTRGKRD
HCCCCCCCCEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8407781; 1900916 [H]