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The map label for this gene is yfdE [H]

Identifier: 86751044

GI number: 86751044

Start: 4491330

End: 4492424

Strand: Direct

Name: yfdE [H]

Synonym: RPB_3936

Alternate gene names: 86751044

Gene position: 4491330-4492424 (Clockwise)

Preceding gene: 86751043

Following gene: 86751045

Centisome position: 84.24

GC content: 66.94

Gene sequence:

>1095_bases
ATGCTCCCGCTCGAAGGACTGACCGTCATCGCCGTCGAACAGGCGGTCGCCGCCCCGTTCTGCAGTTCGCGGCTGGCCGA
TGCCGGCGCCCATGTCATCAAGATCGAACGCCCCGAGGGCGATTTCGCGCGCGGCTATGACCACGCCGCCAAGGGCCAGA
GCAGCTACTTCGTCTGGCTCAACCGCGGCAAGGACTCCGCCGTGGTCGATCTTGCGACCAAGGAAGGCCGCGACGAACTC
GAAAGGCTGATCGCCTCGGCCGACGTGCTGCTGCAGAATCTGAAGCCCGGCTCGATGGACAAGCTCGGCTTCACCCGCGA
GCGGCTGCGCGCCGACTATCCGAAGCTGATCATCTGCACCATCTCCGGCTATGGCGACGACGGGCCTTACGCGCATCGCA
AGGCCTATGATCTGTTGATCCAGGCCGAAAGCGGCCTCGCCTCGATCACCGGCGGCCCGGAAAGCGCCTCGCGCGTCGGC
ATGTCGATCGTCGACGTCGCCACCGGCGCCACCGCGCACGCGGCGATCCTCGAAGCGCTGATCGGCCGCGGCCGCACCGG
CCAGGGCGCCGACATCCGGATCTCGATGTTCGACGTGATGGCCGACTGGCTGACCGTGCCGCTGCTCAACGCCGAGGCCG
GCAATCCGCCGAAACGGCTCGGGCTGGCGCATCCGTCGATCGCGCCCTATGGCGTGTTCACCTCCAAGGACGGCAAGGAC
ATCCTGATCTCGATCCAGAGCGAGCGGGAGTGGAAAAAACTCTGCTCGGACGTGCTGCGCCAGCCGGATCTCGCGACCGA
TCCGCGGCTGTGCAGCGGCGTCGAGCGGGTGAAGAACCGCGCCTACACCGACAAGATCGTCGCCGACATCTTCGGCTCGC
TGACCCGCGACGATCTGCTCGAACATCTCGCCAGCGCCGACATCGCCTTCGCCGAGGTCAACACGATGGAAGATCTGTCG
CAGCATCCGCATCTGCGCCGGATCGAGGTCGACACCCCGAACGGCAAGGTGACCTATCCGGCGCCGGCCGCGATCGTGGT
CGGCGACGACCGCCGGTACGGCGCCGTGCCGGGCATCGGCGACAAGCGCAAGTAA

Upstream 100 bases:

>100_bases
GACACGAGTCGCTGACTCTCGGCCTTGCGGAGACGCCCCCTCACCCGGACCGTCGCTACGCGACGATCCGACCTCTCCCC
GCAAGCGGGGAGAGGTGAGC

Downstream 100 bases:

>100_bases
CAAGGGCCAACACCATGACTGACGCGCTCGACATCGATCACCTGCGGCAATGGATCGGCCGCAGCGAACAGGCCGCCGAC
ACCGTCACGGCGCAGCTCGT

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 364; Mature: 364

Protein sequence:

>364_residues
MLPLEGLTVIAVEQAVAAPFCSSRLADAGAHVIKIERPEGDFARGYDHAAKGQSSYFVWLNRGKDSAVVDLATKEGRDEL
ERLIASADVLLQNLKPGSMDKLGFTRERLRADYPKLIICTISGYGDDGPYAHRKAYDLLIQAESGLASITGGPESASRVG
MSIVDVATGATAHAAILEALIGRGRTGQGADIRISMFDVMADWLTVPLLNAEAGNPPKRLGLAHPSIAPYGVFTSKDGKD
ILISIQSEREWKKLCSDVLRQPDLATDPRLCSGVERVKNRAYTDKIVADIFGSLTRDDLLEHLASADIAFAEVNTMEDLS
QHPHLRRIEVDTPNGKVTYPAPAAIVVGDDRRYGAVPGIGDKRK

Sequences:

>Translated_364_residues
MLPLEGLTVIAVEQAVAAPFCSSRLADAGAHVIKIERPEGDFARGYDHAAKGQSSYFVWLNRGKDSAVVDLATKEGRDEL
ERLIASADVLLQNLKPGSMDKLGFTRERLRADYPKLIICTISGYGDDGPYAHRKAYDLLIQAESGLASITGGPESASRVG
MSIVDVATGATAHAAILEALIGRGRTGQGADIRISMFDVMADWLTVPLLNAEAGNPPKRLGLAHPSIAPYGVFTSKDGKD
ILISIQSEREWKKLCSDVLRQPDLATDPRLCSGVERVKNRAYTDKIVADIFGSLTRDDLLEHLASADIAFAEVNTMEDLS
QHPHLRRIEVDTPNGKVTYPAPAAIVVGDDRRYGAVPGIGDKRK
>Mature_364_residues
MLPLEGLTVIAVEQAVAAPFCSSRLADAGAHVIKIERPEGDFARGYDHAAKGQSSYFVWLNRGKDSAVVDLATKEGRDEL
ERLIASADVLLQNLKPGSMDKLGFTRERLRADYPKLIICTISGYGDDGPYAHRKAYDLLIQAESGLASITGGPESASRVG
MSIVDVATGATAHAAILEALIGRGRTGQGADIRISMFDVMADWLTVPLLNAEAGNPPKRLGLAHPSIAPYGVFTSKDGKD
ILISIQSEREWKKLCSDVLRQPDLATDPRLCSGVERVKNRAYTDKIVADIFGSLTRDDLLEHLASADIAFAEVNTMEDLS
QHPHLRRIEVDTPNGKVTYPAPAAIVVGDDRRYGAVPGIGDKRK

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=351, Percent_Identity=32.1937321937322, Blast_Score=177, Evalue=2e-44,
Organism=Homo sapiens, GI300863124, Length=327, Percent_Identity=32.4159021406728, Blast_Score=169, Evalue=4e-42,
Organism=Homo sapiens, GI300863126, Length=348, Percent_Identity=29.0229885057471, Blast_Score=139, Evalue=3e-33,
Organism=Homo sapiens, GI13376042, Length=327, Percent_Identity=29.6636085626911, Blast_Score=135, Evalue=5e-32,
Organism=Homo sapiens, GI266456254, Length=355, Percent_Identity=26.7605633802817, Blast_Score=99, Evalue=6e-21,
Organism=Homo sapiens, GI42794625, Length=355, Percent_Identity=26.7605633802817, Blast_Score=99, Evalue=7e-21,
Organism=Homo sapiens, GI266458397, Length=275, Percent_Identity=29.0909090909091, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI266458393, Length=199, Percent_Identity=32.6633165829146, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI42822893, Length=144, Percent_Identity=34.0277777777778, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI266458395, Length=144, Percent_Identity=34.0277777777778, Blast_Score=80, Evalue=2e-15,
Organism=Escherichia coli, GI87082093, Length=288, Percent_Identity=38.1944444444444, Blast_Score=194, Evalue=8e-51,
Organism=Escherichia coli, GI1788717, Length=373, Percent_Identity=30.0268096514745, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1786222, Length=331, Percent_Identity=26.8882175226586, Blast_Score=79, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI115535051, Length=326, Percent_Identity=25.7668711656442, Blast_Score=77, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI32564160, Length=203, Percent_Identity=30.5418719211823, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24648431, Length=341, Percent_Identity=34.8973607038123, Blast_Score=183, Evalue=1e-46,
Organism=Drosophila melanogaster, GI24585488, Length=370, Percent_Identity=24.5945945945946, Blast_Score=88, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 39299; Mature: 39299

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPLEGLTVIAVEQAVAAPFCSSRLADAGAHVIKIERPEGDFARGYDHAAKGQSSYFVWL
CCCCCCCEEEEEHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHCCCHHHCCCCCEEEEE
NRGKDSAVVDLATKEGRDELERLIASADVLLQNLKPGSMDKLGFTRERLRADYPKLIICT
ECCCCCEEEEEHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHCCCCEEEEEE
ISGYGDDGPYAHRKAYDLLIQAESGLASITGGPESASRVGMSIVDVATGATAHAAILEAL
EECCCCCCCCHHHHHEEEEEECCCCCEEECCCCCHHHHHCCHHHHHHCCCHHHHHHHHHH
IGRGRTGQGADIRISMFDVMADWLTVPLLNAEAGNPPKRLGLAHPSIAPYGVFTSKDGKD
HCCCCCCCCCEEEEHHHHHHHHHHHHEEEECCCCCCHHHHCCCCCCCCCCEEEECCCCCE
ILISIQSEREWKKLCSDVLRQPDLATDPRLCSGVERVKNRAYTDKIVADIFGSLTRDDLL
EEEEECCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
EHLASADIAFAEVNTMEDLSQHPHLRRIEVDTPNGKVTYPAPAAIVVGDDRRYGAVPGIG
HHHHHCCCHHHHHCCHHHHHHCCCCEEEEEECCCCEEECCCCEEEEEECCCCCCCCCCCC
DKRK
CCCC
>Mature Secondary Structure
MLPLEGLTVIAVEQAVAAPFCSSRLADAGAHVIKIERPEGDFARGYDHAAKGQSSYFVWL
CCCCCCCEEEEEHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHCCCHHHCCCCCEEEEE
NRGKDSAVVDLATKEGRDELERLIASADVLLQNLKPGSMDKLGFTRERLRADYPKLIICT
ECCCCCEEEEEHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHCCCCEEEEEE
ISGYGDDGPYAHRKAYDLLIQAESGLASITGGPESASRVGMSIVDVATGATAHAAILEAL
EECCCCCCCCHHHHHEEEEEECCCCCEEECCCCCHHHHHCCHHHHHHCCCHHHHHHHHHH
IGRGRTGQGADIRISMFDVMADWLTVPLLNAEAGNPPKRLGLAHPSIAPYGVFTSKDGKD
HCCCCCCCCCEEEEHHHHHHHHHHHHEEEECCCCCCHHHHCCCCCCCCCCEEEECCCCCE
ILISIQSEREWKKLCSDVLRQPDLATDPRLCSGVERVKNRAYTDKIVADIFGSLTRDDLL
EEEEECCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
EHLASADIAFAEVNTMEDLSQHPHLRRIEVDTPNGKVTYPAPAAIVVGDDRRYGAVPGIG
HHHHHCCCHHHHHCCHHHHHHCCCCEEEEEECCCCEEECCCCEEEEEECCCCCCCCCCCC
DKRK
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]