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The map label for this gene is yiaN [C]

Identifier: 86750690

GI number: 86750690

Start: 4104303

End: 4105613

Strand: Reverse

Name: yiaN [C]

Synonym: RPB_3580

Alternate gene names: 86750690

Gene position: 4105613-4104303 (Counterclockwise)

Preceding gene: 86750691

Following gene: 86750689

Centisome position: 77.0

GC content: 65.6

Gene sequence:

>1311_bases
ATGACCATGGACAACGACGTGGTGGCGCTGATCGGTTTCGTCAGCCTGTTCGCGCTGATGCTGCTGCGCGTGCCGATCGG
CATGGCGATGGGGCTCGTCGGCATCACCGGCTTCGGCTATCTCACCGGCTTCGAGCCGGCGCTGAAGCTGATCGGCCAGA
CCACGATGCGCACGGTCACCGACTATTCCTTCGGCGTGATCCCGATGTTCCTGCTGATGGGCGCCTTCGTGTCGGTGTCG
GGCATCAGCCGCGAATTGTTCCGCGCCGGCTACACCTTCGTCGGGCATTGGCGCGGCGGCCTCGGTATCGCCACCATCGC
GGCCTGCGGCGGCTTCGCGGCGATCTCCGGCTCGTCGGTGGCGACGGCGGCGACGTTCTCCTCGGTCGCCTATCCGGAAA
TGCGGCGCTACAATTATCCGCAATCCTTCTCCACCGGGGTGATCGCGGTCGGCGGCACGTTGGGCGCGATGCTGCCGCCC
TCGACCGTGCTCGCGGTCTACGGCATCATCACCCAGCAGGACATCGGCAAATTGTTCATGGCCGGCATCGTTCCCGGCCT
GCTGGCGATCATCATGCACATGATCACCATCGCGGTGATCGGCGTGGCGCGGCCGGGCTATCTGCCGACCGCCCCGCGCA
GTTCGTGGCGCGACCGGATGCTGGCGTTCCGCGACGTCTGGTCGCCGCTGCTGCTGTTCATCTTCGTGATCGGCGGGCTG
TATGGCGGGTTCTTCATCCCGACCGAGGCTGGCGCGGTCGGTGCCGTCGGCGCCTTCCTGATCGGCATCGCGCGCGGCAA
GCTGACCCGCGACGGCATCCTGCAATCGCTGCTGCAGGCGACACGCACCGCGGCCGCGGTGTTCACCGTGCTGATCGGCG
CGCTGTGTTTCGGCTATTTCCTCACCATCACCCAGACCCCGCAGGCGATCACCGAGTTCCTCACCGGCCTCGGCCTCGGG
CCCTACGGCGTGCTGGCGCTGATCCTGGTGATGTATCTGGTGCTCGGCTGTGTGATGGACGCGATGGCGATGGTGATCCT
CACCGTGCCGATCGTGTTCCCGGTGATCACCTCGCTCGGCTTCGATCCGATCTGGTTCGGCGTCATCGTGGTGGTGACGG
TCGAACTCGGACTGATCTCGCCGCCGGTCGGGATGAACGTGTTCGTGATCAAGAGCGTGATCAAGGATGTCAGCATGGGC
ACCGTGTTCAGGGGCGTGGCGCCGTTCGTGGTCACCGACGTGATCCGGCTGGTGATCCTGATCCTGTTCCCGATCCTGGC
GACCTGGCTGCCGCAACGCATGGTAGGATGA

Upstream 100 bases:

>100_bases
GGCTCGGCGACGTCGCGGCCGTCGTGCTGATCGCGATTCGAACCTGGCGGCTGATCTTCCATCCGGACGAACTGCACGAC
CCCAAATTCAAGCCGGTGGA

Downstream 100 bases:

>100_bases
CGCAATGAAACCCGTGCTCGAGACCCGTTACGTCTTCACCATCACCGCGAGGATCGGCGAGGTGATCTCCGCCGGCGACA
CCGGCGCCGGCGTGCGCCGG

Product: TRAP dicarboxylate transporter DctM subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 436; Mature: 435

Protein sequence:

>436_residues
MTMDNDVVALIGFVSLFALMLLRVPIGMAMGLVGITGFGYLTGFEPALKLIGQTTMRTVTDYSFGVIPMFLLMGAFVSVS
GISRELFRAGYTFVGHWRGGLGIATIAACGGFAAISGSSVATAATFSSVAYPEMRRYNYPQSFSTGVIAVGGTLGAMLPP
STVLAVYGIITQQDIGKLFMAGIVPGLLAIIMHMITIAVIGVARPGYLPTAPRSSWRDRMLAFRDVWSPLLLFIFVIGGL
YGGFFIPTEAGAVGAVGAFLIGIARGKLTRDGILQSLLQATRTAAAVFTVLIGALCFGYFLTITQTPQAITEFLTGLGLG
PYGVLALILVMYLVLGCVMDAMAMVILTVPIVFPVITSLGFDPIWFGVIVVVTVELGLISPPVGMNVFVIKSVIKDVSMG
TVFRGVAPFVVTDVIRLVILILFPILATWLPQRMVG

Sequences:

>Translated_436_residues
MTMDNDVVALIGFVSLFALMLLRVPIGMAMGLVGITGFGYLTGFEPALKLIGQTTMRTVTDYSFGVIPMFLLMGAFVSVS
GISRELFRAGYTFVGHWRGGLGIATIAACGGFAAISGSSVATAATFSSVAYPEMRRYNYPQSFSTGVIAVGGTLGAMLPP
STVLAVYGIITQQDIGKLFMAGIVPGLLAIIMHMITIAVIGVARPGYLPTAPRSSWRDRMLAFRDVWSPLLLFIFVIGGL
YGGFFIPTEAGAVGAVGAFLIGIARGKLTRDGILQSLLQATRTAAAVFTVLIGALCFGYFLTITQTPQAITEFLTGLGLG
PYGVLALILVMYLVLGCVMDAMAMVILTVPIVFPVITSLGFDPIWFGVIVVVTVELGLISPPVGMNVFVIKSVIKDVSMG
TVFRGVAPFVVTDVIRLVILILFPILATWLPQRMVG
>Mature_435_residues
TMDNDVVALIGFVSLFALMLLRVPIGMAMGLVGITGFGYLTGFEPALKLIGQTTMRTVTDYSFGVIPMFLLMGAFVSVSG
ISRELFRAGYTFVGHWRGGLGIATIAACGGFAAISGSSVATAATFSSVAYPEMRRYNYPQSFSTGVIAVGGTLGAMLPPS
TVLAVYGIITQQDIGKLFMAGIVPGLLAIIMHMITIAVIGVARPGYLPTAPRSSWRDRMLAFRDVWSPLLLFIFVIGGLY
GGFFIPTEAGAVGAVGAFLIGIARGKLTRDGILQSLLQATRTAAAVFTVLIGALCFGYFLTITQTPQAITEFLTGLGLGP
YGVLALILVMYLVLGCVMDAMAMVILTVPIVFPVITSLGFDPIWFGVIVVVTVELGLISPPVGMNVFVIKSVIKDVSMGT
VFRGVAPFVVTDVIRLVILILFPILATWLPQRMVG

Specific function: Unknown

COG id: COG1593

COG function: function code G; TRAP-type C4-dicarboxylate transport system, large permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TRAP transporter large permease family [H]

Homologues:

Organism=Escherichia coli, GI48994950, Length=387, Percent_Identity=31.7829457364341, Blast_Score=162, Evalue=5e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010656
- InterPro:   IPR004681 [H]

Pfam domain/function: PF06808 DctM [H]

EC number: NA

Molecular weight: Translated: 46170; Mature: 46039

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TMDNDVVALIGFVSLFALMLLRVPIGMAMGLVGITGFGYLTGFEPALKLIGQTTMRTVT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
DYSFGVIPMFLLMGAFVSVSGISRELFRAGYTFVGHWRGGLGIATIAACGGFAAISGSSV
HCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEECCCCHHHHHHHHHCCHHHCCCCCH
ATAATFSSVAYPEMRRYNYPQSFSTGVIAVGGTLGAMLPPSTVLAVYGIITQQDIGKLFM
HHHHHHHHHCCHHHHHCCCCCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHHHHHHHH
AGIVPGLLAIIMHMITIAVIGVARPGYLPTAPRSSWRDRMLAFRDVWSPLLLFIFVIGGL
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
YGGFFIPTEAGAVGAVGAFLIGIARGKLTRDGILQSLLQATRTAAAVFTVLIGALCFGYF
HCCEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTITQTPQAITEFLTGLGLGPYGVLALILVMYLVLGCVMDAMAMVILTVPIVFPVITSLG
HHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
FDPIWFGVIVVVTVELGLISPPVGMNVFVIKSVIKDVSMGTVFRGVAPFVVTDVIRLVIL
CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILFPILATWLPQRMVG
HHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]