Definition Rhodopseudomonas palustris HaA2, complete genome.
Accession NC_007778
Length 5,331,656

Click here to switch to the map view.

The map label for this gene is 86750579

Identifier: 86750579

GI number: 86750579

Start: 3974344

End: 3974913

Strand: Reverse

Name: 86750579

Synonym: RPB_3468

Alternate gene names: NA

Gene position: 3974913-3974344 (Counterclockwise)

Preceding gene: 86750582

Following gene: 86750578

Centisome position: 74.55

GC content: 73.16

Gene sequence:

>570_bases
ATGTCGGCGATTTTGCTGGCGGGGCCGGTGGTGGAGCCGTGGACGGTTCCCGAGCTGAAGGCGTTCCTGCGCGTCGCGCA
CGACGACGACGATTCGGTGATCGCGTCGCTGCTCGCCGCCGCGCGCGCCCAGATCGAGGCGATGACGCGGCGCGCGCTGC
TGTCGCAGAGCTGGCGGATCACGCGCGACGCCTGGCCGCGCGACGGCCGGCTCGCGCTGCGGATCGGGCCGCTGCGGGCG
CTGAGCGCGGCGCGGGTGTTCGATGCCGAAGGCATTGCGCATGAGGTCGATCTCGCGCGCTTCGTGATCGACGTCGCGGG
CGGCACGATCGCCGCGCCGGCGTGGTCGGTGCCACAGCCGGGGCGCAGCGTCGGCGGCATCGCGCTCGACCTCGAGCTCG
GCTACGGCACGCAACCTTCCGAGGTGCCGGAGCTGCTGCGCCATGCGGTGCGCACGCTGGCGGCGCATTGGTACGACAAT
CGCGGGCTGGCGGCGATCGGCTCCAGCGTGGCGATGCTGCCGGGCAGCGTCGCGGCGATGATCGCGAGCTTCCGGGTGCC
GGCGCTATGA

Upstream 100 bases:

>100_bases
GGCGGCGATCAGAACGGCAAGTGTCGAGCGGCGGATCATGGCGGGCTTTGAGCCTCGCCGCCGCCGCGCTGTCAACCTGA
ACATTTCGGAGGGATGAGCA

Downstream 100 bases:

>100_bases
TCGATCCGGGCCGACTGAACACGCGGCTGGTGCTGGAAGTGCCGGTCGAGAGCGGCGACGGCCAGGGCGGGGTGACGCGC
AGCTATGCGCCGCAGCAAGT

Product: bacteriophage protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MSAILLAGPVVEPWTVPELKAFLRVAHDDDDSVIASLLAAARAQIEAMTRRALLSQSWRITRDAWPRDGRLALRIGPLRA
LSAARVFDAEGIAHEVDLARFVIDVAGGTIAAPAWSVPQPGRSVGGIALDLELGYGTQPSEVPELLRHAVRTLAAHWYDN
RGLAAIGSSVAMLPGSVAAMIASFRVPAL

Sequences:

>Translated_189_residues
MSAILLAGPVVEPWTVPELKAFLRVAHDDDDSVIASLLAAARAQIEAMTRRALLSQSWRITRDAWPRDGRLALRIGPLRA
LSAARVFDAEGIAHEVDLARFVIDVAGGTIAAPAWSVPQPGRSVGGIALDLELGYGTQPSEVPELLRHAVRTLAAHWYDN
RGLAAIGSSVAMLPGSVAAMIASFRVPAL
>Mature_188_residues
SAILLAGPVVEPWTVPELKAFLRVAHDDDDSVIASLLAAARAQIEAMTRRALLSQSWRITRDAWPRDGRLALRIGPLRAL
SAARVFDAEGIAHEVDLARFVIDVAGGTIAAPAWSVPQPGRSVGGIALDLELGYGTQPSEVPELLRHAVRTLAAHWYDNR
GLAAIGSSVAMLPGSVAAMIASFRVPAL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20086; Mature: 19955

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAILLAGPVVEPWTVPELKAFLRVAHDDDDSVIASLLAAARAQIEAMTRRALLSQSWRI
CCCEEEECCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TRDAWPRDGRLALRIGPLRALSAARVFDAEGIAHEVDLARFVIDVAGGTIAAPAWSVPQP
CCCCCCCCCEEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCC
GRSVGGIALDLELGYGTQPSEVPELLRHAVRTLAAHWYDNRGLAAIGSSVAMLPGSVAAM
CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHCCHHHHHH
IASFRVPAL
HHHHCCCCC
>Mature Secondary Structure 
SAILLAGPVVEPWTVPELKAFLRVAHDDDDSVIASLLAAARAQIEAMTRRALLSQSWRI
CCEEEECCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TRDAWPRDGRLALRIGPLRALSAARVFDAEGIAHEVDLARFVIDVAGGTIAAPAWSVPQP
CCCCCCCCCEEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCC
GRSVGGIALDLELGYGTQPSEVPELLRHAVRTLAAHWYDNRGLAAIGSSVAMLPGSVAAM
CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHCCHHHHHH
IASFRVPAL
HHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA