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The map label for this gene is omp [H]

Identifier: 86750563

GI number: 86750563

Start: 3958897

End: 3959403

Strand: Reverse

Name: omp [H]

Synonym: RPB_3452

Alternate gene names: 86750563

Gene position: 3959403-3958897 (Counterclockwise)

Preceding gene: 86750564

Following gene: 86750562

Centisome position: 74.26

GC content: 71.99

Gene sequence:

>507_bases
ATGACGCCTGCGCGTGACATCGCCAGCGCTGCGAGACCGTCGGCGCGGTTGGCGAAGCCTTCGTCGGCGGCGCTGCTGCT
GCTCGGCGCGCTGGCGCTGGCCGGCTGCGACCGCACCACCAACCTCGCGGCGCGAGTGGATTCCTTTGCCAGCAATGTGG
CGCCCGATTTCGGCCGGAGCGGCGATGGCGCCGCCGCCGCGGTCGACAATGCGGCCATGGGCGGGCTGATCGGGCCGAAG
ATCGGTGCGCTGCTCAACGCGGAAGATCGCCGGCTGGCTTATGCGGCCGAACTCGAAGCGCTCGATCACGGCGAATCCGG
CGCCCCGGTGCCGTGGAAGAACCCGTCCTCCGGCCGCTATGGCAACATCGTGCCGGGGCCGGCCTATGCCAAGCAGGGCG
CGACCTGCCGCGGCTTCTCGCACAGCGTCACGGTCGGCCGCCAGCTCGAGATCGCCCGCGGCACCGCCTGCCGGACCAAT
GACGGGCCGTGGACAGCGGCGGGCTAG

Upstream 100 bases:

>100_bases
CCGGCCGCTGCCACAGCGTCGCCCGAATTTGTCGCTCCGTTGCCTTGAGCGTTAGGGATTTCGGGGTAAGACGTTGGTGG
GGAATGGATTGGGGACTGCA

Downstream 100 bases:

>100_bases
CGTTCGGGCGCGTCCGTCCTACTCCCGATCACCGATTGCCCAGTCTGCCCAATCTGTTGCGGCGCTGGGTTGCGGTTGAT
GTGGAACATCAATCCTGTTC

Product: LipA a lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 167

Protein sequence:

>168_residues
MTPARDIASAARPSARLAKPSSAALLLLGALALAGCDRTTNLAARVDSFASNVAPDFGRSGDGAAAAVDNAAMGGLIGPK
IGALLNAEDRRLAYAAELEALDHGESGAPVPWKNPSSGRYGNIVPGPAYAKQGATCRGFSHSVTVGRQLEIARGTACRTN
DGPWTAAG

Sequences:

>Translated_168_residues
MTPARDIASAARPSARLAKPSSAALLLLGALALAGCDRTTNLAARVDSFASNVAPDFGRSGDGAAAAVDNAAMGGLIGPK
IGALLNAEDRRLAYAAELEALDHGESGAPVPWKNPSSGRYGNIVPGPAYAKQGATCRGFSHSVTVGRQLEIARGTACRTN
DGPWTAAG
>Mature_167_residues
TPARDIASAARPSARLAKPSSAALLLLGALALAGCDRTTNLAARVDSFASNVAPDFGRSGDGAAAAVDNAAMGGLIGPKI
GALLNAEDRRLAYAAELEALDHGESGAPVPWKNPSSGRYGNIVPGPAYAKQGATCRGFSHSVTVGRQLEIARGTACRTND
GPWTAAG

Specific function: Unknown

COG id: COG4520

COG function: function code M; Surface antigen

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rickettsiale 17 kDa surface antigen family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008816
- InterPro:   IPR016364 [H]

Pfam domain/function: PF05433 Rick_17kDa_Anti [H]

EC number: NA

Molecular weight: Translated: 16955; Mature: 16824

Theoretical pI: Translated: 8.88; Mature: 8.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPARDIASAARPSARLAKPSSAALLLLGALALAGCDRTTNLAARVDSFASNVAPDFGRS
CCCHHHHHHHCCCCCHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCC
GDGAAAAVDNAAMGGLIGPKIGALLNAEDRRLAYAAELEALDHGESGAPVPWKNPSSGRY
CCCCHHHHCCHHHCCCCCCCHHHHCCCCCCEEHHHHHHHHHCCCCCCCCCCCCCCCCCCC
GNIVPGPAYAKQGATCRGFSHSVTVGRQLEIARGTACRTNDGPWTAAG
CCCCCCCHHHHCCCCCCCCCCCCCCCCEEEECCCCEEECCCCCCCCCC
>Mature Secondary Structure 
TPARDIASAARPSARLAKPSSAALLLLGALALAGCDRTTNLAARVDSFASNVAPDFGRS
CCHHHHHHHCCCCCHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCC
GDGAAAAVDNAAMGGLIGPKIGALLNAEDRRLAYAAELEALDHGESGAPVPWKNPSSGRY
CCCCHHHHCCHHHCCCCCCCHHHHCCCCCCEEHHHHHHHHHCCCCCCCCCCCCCCCCCCC
GNIVPGPAYAKQGATCRGFSHSVTVGRQLEIARGTACRTNDGPWTAAG
CCCCCCCHHHHCCCCCCCCCCCCCCCCEEEECCCCEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA