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The map label for this gene is pqqD

Identifier: 86750531

GI number: 86750531

Start: 3909405

End: 3909713

Strand: Reverse

Name: pqqD

Synonym: RPB_3420

Alternate gene names: 86750531

Gene position: 3909713-3909405 (Counterclockwise)

Preceding gene: 86750532

Following gene: 86750530

Centisome position: 73.33

GC content: 66.02

Gene sequence:

>309_bases
ATGGCGTCGCGCCACATCAGCGTCAGCGAACAGAGCCGGCCGATGCTGCCGCGCCACGCGAAATTGCGTTTCGATGAAAC
AAGGCAGCGCTGGGTGATCCTCGCGCCCGAGCGCGTGTTGGCGCCCGACGACATCGCGGTCGAGATTCTGCAGCTCTGCG
ACGGCGCCCGCAGCGTCGCCGCGATCATCGATACGCTGGCGCTGAAATACACCGCCGACCGCGCCGAAATCGGCGCCGAC
GTGATCGCGATGCTGCAGGACCTCGCCGACAAGGGATTCCTCACCGAGGCGCGTGAGAAGACGCCATGA

Upstream 100 bases:

>100_bases
AACGTGCTGTGGGCGCAGCTCGACGCGCTGCATCACGCCTATGTCGACGGCCACATCCCGCCCGGCGCCTTCGTGCCGCA
GGGCGGGTGAGGGCAGGGCG

Downstream 100 bases:

>100_bases
GCGCCGCGAGGAACGAGACGATTCACGCTGCCGACGGCGTCGCCGTGCTGGAGTCGCGCGGCTCGGTCGCGGAGAATTTC
GGCATTCCGCTCGCGGTGCT

Product: coenzyme PQQ synthesis D

Products: NA

Alternate protein names: Pyrroloquinoline quinone biosynthesis protein D

Number of amino acids: Translated: 102; Mature: 101

Protein sequence:

>102_residues
MASRHISVSEQSRPMLPRHAKLRFDETRQRWVILAPERVLAPDDIAVEILQLCDGARSVAAIIDTLALKYTADRAEIGAD
VIAMLQDLADKGFLTEAREKTP

Sequences:

>Translated_102_residues
MASRHISVSEQSRPMLPRHAKLRFDETRQRWVILAPERVLAPDDIAVEILQLCDGARSVAAIIDTLALKYTADRAEIGAD
VIAMLQDLADKGFLTEAREKTP
>Mature_101_residues
ASRHISVSEQSRPMLPRHAKLRFDETRQRWVILAPERVLAPDDIAVEILQLCDGARSVAAIIDTLALKYTADRAEIGADV
IAMLQDLADKGFLTEAREKTP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pqqD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PQQD_RHOP2 (Q2IUJ4)

Other databases:

- EMBL:   CP000250
- RefSeq:   YP_487027.1
- STRING:   Q2IUJ4
- GeneID:   3911222
- GenomeReviews:   CP000250_GR
- KEGG:   rpb:RPB_3420
- HOGENOM:   HBG544526
- OMA:   WVILAPE
- ProtClustDB:   CLSK820279
- BioCyc:   RPAL316058:RPB_3420-MONOMER
- HAMAP:   MF_00655
- InterPro:   IPR008792
- InterPro:   IPR022479
- TIGRFAMs:   TIGR03859

Pfam domain/function: PF05402 PqqD

EC number: NA

Molecular weight: Translated: 11368; Mature: 11237

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASRHISVSEQSRPMLPRHAKLRFDETRQRWVILAPERVLAPDDIAVEILQLCDGARSVA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHCCCCHHHHHHHHHCCCHHHHH
AIIDTLALKYTADRAEIGADVIAMLQDLADKGFLTEAREKTP
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
ASRHISVSEQSRPMLPRHAKLRFDETRQRWVILAPERVLAPDDIAVEILQLCDGARSVA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHCCCCHHHHHHHHHCCCHHHHH
AIIDTLALKYTADRAEIGADVIAMLQDLADKGFLTEAREKTP
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA