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The map label for this gene is rlp1 [H]

Identifier: 86750338

GI number: 86750338

Start: 3687439

End: 3688542

Strand: Reverse

Name: rlp1 [H]

Synonym: RPB_3227

Alternate gene names: 86750338

Gene position: 3688542-3687439 (Counterclockwise)

Preceding gene: 86750339

Following gene: 86750337

Centisome position: 69.18

GC content: 71.11

Gene sequence:

>1104_bases
ATGACGGACGATCGAATCATCGCGACCTATCGTGTGACCAGCGAGCCTTCGCGGATCGCCGATCGCGCGCAGGGGCTCGC
GATCGAGCAGAGCGTCGAATGCCCGCTCGACGCGATCGGCGATCCGTGGGTGCGCGACGCCATCGTCGGACGGGTCGCGC
TGATCGACCAGATCGGGGCGGGCCGCTACGCGGTGCGGGTCGCGCTGGCCGCGGCGACGGCGCCGGCCGAGCCCGGGCAA
TTGCTCAACATGCTGTTCGGCAACGCCTCGATTCAGCCCGACGTGGCGCTGGTCGATGTCGAATTGCCGCCGGCCTATCT
CGCCGCGTTCGGCGGGCCGAAGCTCGGCCTCGACGGCATCCGTGCGCGGACCGGCGTGCACCGGCGGGCGCTGACCGCCT
CGGCGCTGAAGCCGCAGGGGCTCGCGCCCGCGGCACTGGCCGCGATCGCGCGGCAACTCGCCGAAGGTGGCGTCGACCTG
ATCAAGGACGATCACGGCCTTGCCGATCAGGCCTACAGCCCGTTCGCTGCGCGGATCGCGGCGGTCGGCCGCGCGGTGGA
TGCCGCCAACCAGGCGAGCGGACGGCGGGCGCTGTATGCGCCGCACGTCTCCGGCTCGCTCGACGAGATGCGGCGTCAGC
TCGATCTGATCCGCGCCGAGACCATCCCGGCGCTGATGATGATGCCGATGATCGTCGGGCTGTCGAACTTCCATGTGATC
GCCAGGGAGGCGGAGGGGCTGGTCGTGCTGGCGCATCCGGCGCTGTCGGGCGCGACCAGGATCGCGCCGCCGCTGCTGCT
CGGAAAACTGTTCCGGCTGCTCGGCGCCGACGCCACGGTGTTTCCGCATGCCGGCGGGCGGTTCGCCTACACGCCCGAAA
CCTGCCGCGCATTGGCTGATGCGGCGCGCGGCGACTGGGGCGGGCTGAAGCCGTGCCTGCCGGTGCCCGCGGGCGGCATC
GCGATCGATCGGGTCGAGGAGCTGTTGTCTTTCTACGGCCGTGACGTGATGCTGCTGATCGGCGGCAGCCTGCTCGCCGC
GCGCGAAAACCTCGGTGCAGAGGCGGCGCGCTTTGTCGCGGAGGTCGCAGCCCATGGCGCATGA

Upstream 100 bases:

>100_bases
CAAGGTCGAGCGGCTGGAGTAGGGCGCGCATCGCGGCACTGTCATCCGGGCTGTGCTAGAGAAGCCGTCGCGCCGGCGGG
GCGCGGCGGGACGGCAGCGG

Downstream 100 bases:

>100_bases
CGAGACCAAGAGCGAGCAGCCCGGCGTGCGCAAGCAGATTGCGCCCGGGCGCTGGGACGGCGTCGAACCGATGCAATACA
AGCAGGCGGACACCGCGCCG

Product: rubisco-like protein Rlp1

Products: NA

Alternate protein names: RuBisCO-like protein [H]

Number of amino acids: Translated: 367; Mature: 366

Protein sequence:

>367_residues
MTDDRIIATYRVTSEPSRIADRAQGLAIEQSVECPLDAIGDPWVRDAIVGRVALIDQIGAGRYAVRVALAAATAPAEPGQ
LLNMLFGNASIQPDVALVDVELPPAYLAAFGGPKLGLDGIRARTGVHRRALTASALKPQGLAPAALAAIARQLAEGGVDL
IKDDHGLADQAYSPFAARIAAVGRAVDAANQASGRRALYAPHVSGSLDEMRRQLDLIRAETIPALMMMPMIVGLSNFHVI
AREAEGLVVLAHPALSGATRIAPPLLLGKLFRLLGADATVFPHAGGRFAYTPETCRALADAARGDWGGLKPCLPVPAGGI
AIDRVEELLSFYGRDVMLLIGGSLLAARENLGAEAARFVAEVAAHGA

Sequences:

>Translated_367_residues
MTDDRIIATYRVTSEPSRIADRAQGLAIEQSVECPLDAIGDPWVRDAIVGRVALIDQIGAGRYAVRVALAAATAPAEPGQ
LLNMLFGNASIQPDVALVDVELPPAYLAAFGGPKLGLDGIRARTGVHRRALTASALKPQGLAPAALAAIARQLAEGGVDL
IKDDHGLADQAYSPFAARIAAVGRAVDAANQASGRRALYAPHVSGSLDEMRRQLDLIRAETIPALMMMPMIVGLSNFHVI
AREAEGLVVLAHPALSGATRIAPPLLLGKLFRLLGADATVFPHAGGRFAYTPETCRALADAARGDWGGLKPCLPVPAGGI
AIDRVEELLSFYGRDVMLLIGGSLLAARENLGAEAARFVAEVAAHGA
>Mature_366_residues
TDDRIIATYRVTSEPSRIADRAQGLAIEQSVECPLDAIGDPWVRDAIVGRVALIDQIGAGRYAVRVALAAATAPAEPGQL
LNMLFGNASIQPDVALVDVELPPAYLAAFGGPKLGLDGIRARTGVHRRALTASALKPQGLAPAALAAIARQLAEGGVDLI
KDDHGLADQAYSPFAARIAAVGRAVDAANQASGRRALYAPHVSGSLDEMRRQLDLIRAETIPALMMMPMIVGLSNFHVIA
REAEGLVVLAHPALSGATRIAPPLLLGKLFRLLGADATVFPHAGGRFAYTPETCRALADAARGDWGGLKPCLPVPAGGIA
IDRVEELLSFYGRDVMLLIGGSLLAARENLGAEAARFVAEVAAHGA

Specific function: Unknown. Probably does not have RuBisCO activity [H]

COG id: COG1850

COG function: function code G; Ribulose 1,5-bisphosphate carboxylase, large subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RuBisCO large chain family. Type IV subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000685
- InterPro:   IPR017443 [H]

Pfam domain/function: PF00016 RuBisCO_large [H]

EC number: NA

Molecular weight: Translated: 38294; Mature: 38162

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDDRIIATYRVTSEPSRIADRAQGLAIEQSVECPLDAIGDPWVRDAIVGRVALIDQIGA
CCCCEEEEEEEECCCHHHHHHHHHCCEEECCCCCCHHHCCCHHHHHHHHHHHHHHHHHCC
GRYAVRVALAAATAPAEPGQLLNMLFGNASIQPDVALVDVELPPAYLAAFGGPKLGLDGI
CHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHCCCCCCCCCHH
RARTGVHRRALTASALKPQGLAPAALAAIARQLAEGGVDLIKDDHGLADQAYSPFAARIA
HHHHCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHCCHHHHHHH
AVGRAVDAANQASGRRALYAPHVSGSLDEMRRQLDLIRAETIPALMMMPMIVGLSNFHVI
HHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
AREAEGLVVLAHPALSGATRIAPPLLLGKLFRLLGADATVFPHAGGRFAYTPETCRALAD
EECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCEEECHHHHHHHHH
AARGDWGGLKPCLPVPAGGIAIDRVEELLSFYGRDVMLLIGGSLLAARENLGAEAARFVA
HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHCCHHHHHHHH
EVAAHGA
HHHHCCC
>Mature Secondary Structure 
TDDRIIATYRVTSEPSRIADRAQGLAIEQSVECPLDAIGDPWVRDAIVGRVALIDQIGA
CCCEEEEEEEECCCHHHHHHHHHCCEEECCCCCCHHHCCCHHHHHHHHHHHHHHHHHCC
GRYAVRVALAAATAPAEPGQLLNMLFGNASIQPDVALVDVELPPAYLAAFGGPKLGLDGI
CHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHCCCCCCCCCHH
RARTGVHRRALTASALKPQGLAPAALAAIARQLAEGGVDLIKDDHGLADQAYSPFAARIA
HHHHCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHCCHHHHHHH
AVGRAVDAANQASGRRALYAPHVSGSLDEMRRQLDLIRAETIPALMMMPMIVGLSNFHVI
HHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
AREAEGLVVLAHPALSGATRIAPPLLLGKLFRLLGADATVFPHAGGRFAYTPETCRALAD
EECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCEEECHHHHHHHHH
AARGDWGGLKPCLPVPAGGIAIDRVEELLSFYGRDVMLLIGGSLLAARENLGAEAARFVA
HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHCCHHHHHHHH
EVAAHGA
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA