Click here to switch to the map view.

The map label for this gene is yfhF [C]

Identifier: 86750105

GI number: 86750105

Start: 3402539

End: 3402943

Strand: Reverse

Name: yfhF [C]

Synonym: RPB_2988

Alternate gene names: 86750105

Gene position: 3402943-3402539 (Counterclockwise)

Preceding gene: 86750106

Following gene: 86750104

Centisome position: 63.83

GC content: 67.65

Gene sequence:

>405_bases
ATGACCGAGACGACACCAGCAACGACCCCGACCAAGCCCGCGCGCCGCCCGCGGCCGCAGGTGATGCGCCTGACCGAGGC
CGCCGCGACCCGCGTCAAGGACCTGATGTCGCGCGCCGACGGCGAGATCGTCGGGCTGCGCGTCGGCATCAAGAACGGCG
GCTGCGCCGGCCAGTCCTACACGGTGGAATACGCCCGCGATCTGCAGGCGACCGACGAGGTGATCGAGGACAAGGGCGTC
AAGATCCTGATCGACCCCAAGGCCGTGCTGTTCCTGCTCGGCACCGAGATGGACTACAAGGCCGACAAGATGCAGGCGCA
GTTCGTGTTCAACAATCCGAACCAGATCTCGGCCTGCGGCTGCGGCGAGTCGGTCGAGCTGGTGCCGGCCAACGTCGACG
GCTGA

Upstream 100 bases:

>100_bases
GCACTGAACTGGATTGCTTCGCTTCGCTCGCAATGACGGGGTGAGGGTCTTAGATAATCAACCAACCGGGCGGCCTTGAA
CCGCCACGAGGATGGAAACG

Downstream 100 bases:

>100_bases
GGCGTCCGCCGTCGCGATCGCACGGGGGTAGACCCGGTGACGGGTCGAGAGCGGCGGGGGCGCCGATGGACCGCGAATTC
CTCATCGATTTGTTTTCGCC

Product: HesB/YadR/YfhF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 133

Protein sequence:

>134_residues
MTETTPATTPTKPARRPRPQVMRLTEAAATRVKDLMSRADGEIVGLRVGIKNGGCAGQSYTVEYARDLQATDEVIEDKGV
KILIDPKAVLFLLGTEMDYKADKMQAQFVFNNPNQISACGCGESVELVPANVDG

Sequences:

>Translated_134_residues
MTETTPATTPTKPARRPRPQVMRLTEAAATRVKDLMSRADGEIVGLRVGIKNGGCAGQSYTVEYARDLQATDEVIEDKGV
KILIDPKAVLFLLGTEMDYKADKMQAQFVFNNPNQISACGCGESVELVPANVDG
>Mature_133_residues
TETTPATTPTKPARRPRPQVMRLTEAAATRVKDLMSRADGEIVGLRVGIKNGGCAGQSYTVEYARDLQATDEVIEDKGVK
ILIDPKAVLFLLGTEMDYKADKMQAQFVFNNPNQISACGCGESVELVPANVDG

Specific function: Unknown

COG id: COG0316

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hesB/iscA family [H]

Homologues:

Organism=Homo sapiens, GI52426768, Length=117, Percent_Identity=43.5897435897436, Blast_Score=104, Evalue=2e-23,
Organism=Escherichia coli, GI1788877, Length=106, Percent_Identity=38.6792452830189, Blast_Score=90, Evalue=6e-20,
Organism=Escherichia coli, GI1786351, Length=106, Percent_Identity=35.8490566037736, Blast_Score=81, Evalue=3e-17,
Organism=Escherichia coli, GI1787974, Length=106, Percent_Identity=35.8490566037736, Blast_Score=78, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI25146411, Length=112, Percent_Identity=43.75, Blast_Score=108, Evalue=8e-25,
Organism=Caenorhabditis elegans, GI193209025, Length=106, Percent_Identity=45.2830188679245, Blast_Score=108, Evalue=1e-24,
Organism=Saccharomyces cerevisiae, GI6323001, Length=105, Percent_Identity=39.0476190476191, Blast_Score=92, Evalue=3e-20,
Organism=Drosophila melanogaster, GI24642263, Length=111, Percent_Identity=46.8468468468468, Blast_Score=104, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000361
- InterPro:   IPR016092
- InterPro:   IPR017870 [H]

Pfam domain/function: PF01521 Fe-S_biosyn [H]

EC number: NA

Molecular weight: Translated: 14474; Mature: 14343

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTETTPATTPTKPARRPRPQVMRLTEAAATRVKDLMSRADGEIVGLRVGIKNGGCAGQSY
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCE
TVEYARDLQATDEVIEDKGVKILIDPKAVLFLLGTEMDYKADKMQAQFVFNNPNQISACG
EHHHHHCCHHHHHHHHCCCCEEEECCCEEEEEECCCCCCCCCCEEEEEEECCCCEEEECC
CGESVELVPANVDG
CCCCEEEEECCCCC
>Mature Secondary Structure 
TETTPATTPTKPARRPRPQVMRLTEAAATRVKDLMSRADGEIVGLRVGIKNGGCAGQSY
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCE
TVEYARDLQATDEVIEDKGVKILIDPKAVLFLLGTEMDYKADKMQAQFVFNNPNQISACG
EHHHHHCCHHHHHHHHCCCCEEEECCCEEEEEECCCCCCCCCCEEEEEEECCCCEEEECC
CGESVELVPANVDG
CCCCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]