| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is mvaB [H]
Identifier: 86750049
GI number: 86750049
Start: 3343227
End: 3344132
Strand: Reverse
Name: mvaB [H]
Synonym: RPB_2932
Alternate gene names: 86750049
Gene position: 3344132-3343227 (Counterclockwise)
Preceding gene: 86750050
Following gene: 86750048
Centisome position: 62.72
GC content: 67.0
Gene sequence:
>906_bases ATGACCGACACCGTCCGCATCGTCGAAGTCGGCCCACGCGACGGGCTGCAGAACGAGAAGACGCCGATCAGCGTCGCGGA TCGGATCGCCTTCGTCGAGGGCCTCGTCGCGGCTGGCCTGTCCATCGTCGAGGTCGGTGCGTTCGTGTCGCCGAAGGCGG TGCCACAGATGCAAGGTTCCGACGAGGTGCTGCGCGCATCGCTGAAACTGCCCGGCGAATTCCACGTGCTGGTGCCCAAC GAGAAGGGCTACGATGCCGCGCGCGCCGCCGGCGCGCAGGTGGTCGCGGTGTTCGCCTCGGCGTCGGAAGGCTTTTCACG CGCCAACATCAATTGCTCGGTCGCGGAATCGATCGAGCGGTTCAAGCCGGTGATCGCGCGGGCGCAGGCGGACAATGTGA AAGTCCGCGGTTATGTGTCCTGCGTGCTCGGCTGTCCCTTTGATGGAAATGTGCCGGTGCAGGCGGTGGTCGATACCGCG ACCACGCTGTGGGATCTCGGCTGCTACGAAGTCTCGCTCGGCGACACGATCGGGGTCGGCACGCCGAACAAGGTCCGCGA ATTGCTGCGCGCCTGCGCCGACGCGGTCCCGATGGCCGCGCTGGCGATGCATTTCCACGACACCTACGGCCAGGCCCTTG CCAATCTCTATGCCGGGCTGGAGGAGGGCGCGCGCGTCATCGACAGCGCCGCCGGCGGCCTTGGCGGCTGTCCTTACGCG CCGGGTGCCACCGGCAATGTCGCGACGGAGGACGTCGTGTACATGCTGGAAGGCATGGGGATCGCGACCGGCATCGACAT GGACAAGCTCATCGCCGCGACCAACGGCGTCGCGTCGCTACTCGGCCGCCCGCCGGTCAGTCGGGTGGTGAATGCGTTGA ATGCCAAGCGGAAGCGGGCGGGTTAG
Upstream 100 bases:
>100_bases GTTCGCCGGCACGCTGACGGCGATCAAGTGCAAGGTCGGCGACATCGTCCAGGAGGGCGCCGAACTCGCCGAGATCGAGC CGGACGCGGAGTAGCGCAGC
Downstream 100 bases:
>100_bases CAAAAGCTTGCGTTCGGCTGCTCTGAGCGAAGCTCACGCCGGTATGTTCGACGCAGCGCGTGCATCGTGTTGCGGTGCAC CCGGATAATCGCGAGGCATT
Product: pyruvate carboxyltransferase
Products: NA
Alternate protein names: HL; HMG-CoA lyase; 3-hydroxy-3-methylglutarate-CoA lyase [H]
Number of amino acids: Translated: 301; Mature: 300
Protein sequence:
>301_residues MTDTVRIVEVGPRDGLQNEKTPISVADRIAFVEGLVAAGLSIVEVGAFVSPKAVPQMQGSDEVLRASLKLPGEFHVLVPN EKGYDAARAAGAQVVAVFASASEGFSRANINCSVAESIERFKPVIARAQADNVKVRGYVSCVLGCPFDGNVPVQAVVDTA TTLWDLGCYEVSLGDTIGVGTPNKVRELLRACADAVPMAALAMHFHDTYGQALANLYAGLEEGARVIDSAAGGLGGCPYA PGATGNVATEDVVYMLEGMGIATGIDMDKLIAATNGVASLLGRPPVSRVVNALNAKRKRAG
Sequences:
>Translated_301_residues MTDTVRIVEVGPRDGLQNEKTPISVADRIAFVEGLVAAGLSIVEVGAFVSPKAVPQMQGSDEVLRASLKLPGEFHVLVPN EKGYDAARAAGAQVVAVFASASEGFSRANINCSVAESIERFKPVIARAQADNVKVRGYVSCVLGCPFDGNVPVQAVVDTA TTLWDLGCYEVSLGDTIGVGTPNKVRELLRACADAVPMAALAMHFHDTYGQALANLYAGLEEGARVIDSAAGGLGGCPYA PGATGNVATEDVVYMLEGMGIATGIDMDKLIAATNGVASLLGRPPVSRVVNALNAKRKRAG >Mature_300_residues TDTVRIVEVGPRDGLQNEKTPISVADRIAFVEGLVAAGLSIVEVGAFVSPKAVPQMQGSDEVLRASLKLPGEFHVLVPNE KGYDAARAAGAQVVAVFASASEGFSRANINCSVAESIERFKPVIARAQADNVKVRGYVSCVLGCPFDGNVPVQAVVDTAT TLWDLGCYEVSLGDTIGVGTPNKVRELLRACADAVPMAALAMHFHDTYGQALANLYAGLEEGARVIDSAAGGLGGCPYAP GATGNVATEDVVYMLEGMGIATGIDMDKLIAATNGVASLLGRPPVSRVVNALNAKRKRAG
Specific function: Involved in the catabolism of branched amino acids such as leucine (Probable) [H]
COG id: COG0119
COG function: function code E; Isopropylmalate/homocitrate/citramalate synthases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the HMG-CoA lyase family [H]
Homologues:
Organism=Homo sapiens, GI62198232, Length=289, Percent_Identity=53.6332179930796, Blast_Score=326, Evalue=1e-89, Organism=Homo sapiens, GI109150422, Length=293, Percent_Identity=48.4641638225256, Blast_Score=300, Evalue=9e-82, Organism=Homo sapiens, GI109150427, Length=293, Percent_Identity=48.4641638225256, Blast_Score=300, Evalue=9e-82, Organism=Homo sapiens, GI260654708, Length=182, Percent_Identity=46.1538461538462, Blast_Score=161, Evalue=7e-40, Organism=Caenorhabditis elegans, GI17510563, Length=300, Percent_Identity=44.6666666666667, Blast_Score=261, Evalue=4e-70, Organism=Drosophila melanogaster, GI24582381, Length=298, Percent_Identity=52.3489932885906, Blast_Score=310, Evalue=7e-85,
Paralogues:
None
Copy number: 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR000138 - InterPro: IPR000891 [H]
Pfam domain/function: PF00682 HMGL-like [H]
EC number: =4.1.3.4 [H]
Molecular weight: Translated: 31185; Mature: 31054
Theoretical pI: Translated: 4.99; Mature: 4.99
Prosite motif: PS50991 PYR_CT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDTVRIVEVGPRDGLQNEKTPISVADRIAFVEGLVAAGLSIVEVGAFVSPKAVPQMQGS CCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCC DEVLRASLKLPGEFHVLVPNEKGYDAARAAGAQVVAVFASASEGFSRANINCSVAESIER HHHHHHHHCCCCEEEEEECCCCCCHHHHHCCCEEEEEEEHHCCCCCCCCCCHHHHHHHHH FKPVIARAQADNVKVRGYVSCVLGCPFDGNVPVQAVVDTATTLWDLGCYEVSLGDTIGVG HHHHHHHHCCCCEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEECCCEECCC TPNKVRELLRACADAVPMAALAMHFHDTYGQALANLYAGLEEGARVIDSAAGGLGGCPYA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC PGATGNVATEDVVYMLEGMGIATGIDMDKLIAATNGVASLLGRPPVSRVVNALNAKRKRA CCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC G C >Mature Secondary Structure TDTVRIVEVGPRDGLQNEKTPISVADRIAFVEGLVAAGLSIVEVGAFVSPKAVPQMQGS CCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCC DEVLRASLKLPGEFHVLVPNEKGYDAARAAGAQVVAVFASASEGFSRANINCSVAESIER HHHHHHHHCCCCEEEEEECCCCCCHHHHHCCCEEEEEEEHHCCCCCCCCCCHHHHHHHHH FKPVIARAQADNVKVRGYVSCVLGCPFDGNVPVQAVVDTATTLWDLGCYEVSLGDTIGVG HHHHHHHHCCCCEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEECCCEECCC TPNKVRELLRACADAVPMAALAMHFHDTYGQALANLYAGLEEGARVIDSAAGGLGGCPYA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC PGATGNVATEDVVYMLEGMGIATGIDMDKLIAATNGVASLLGRPPVSRVVNALNAKRKRA CCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC G C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2687236; 2656635; 1637819 [H]