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The map label for this gene is rlpA [H]

Identifier: 86749793

GI number: 86749793

Start: 3057767

End: 3058711

Strand: Direct

Name: rlpA [H]

Synonym: RPB_2676

Alternate gene names: 86749793

Gene position: 3057767-3058711 (Clockwise)

Preceding gene: 86749791

Following gene: 86749795

Centisome position: 57.35

GC content: 67.2

Gene sequence:

>945_bases
ATGGGGATTCGCGGACGAGAGTCGTTGGATCGCGCCGCGCGGGTGGTTGCCGCTGCGGGGGCGTGTCTTGTTCTCGCCAA
TTGCGCGCAATCCGGCAAGTTCAGCCGGGTCGATCCGAAATACGGCGTCTCGACCAGCCCCCGTGTGGTTGCGATGGGAG
AGCCGGTGCCGAAGGGCGGCGGTACGTATCGCATCGGTAAGCCCTATGTGGTCGGCGGGCGTACCTATGTCCCGGAAGAA
GATGCCAATTATCGCGCCGAGGGGCTGGCGTCCTGGTACGGCGACAATTTTCACGGACGCCTGACGGCCAATGGCGAGGT
GTTCGACATGGCGTCGCTGTCGGCGGCGCATCCGACCTTGCCGATCCCGTCTTATGCCCGGGTCACCAATCTCAGCAATG
GCCGTTCGCTGGTCGTGCGCGTCAATGACCGCGGCCCGTACCACGGCAACCGGCTCATCGATGTCTCGAACCGAGCCGCC
GATCTGCTTGAATTCAAACACAAAGGCACCGCGCGCGTGCGGGTCGAATATGTCGGCCGGGCGCCGCTCGAAGGCTCCGA
CGACCGCCAGCTTGTCGCCACCCTGCGGACCAACGAACCGGCACCGGCGCCGGCGACGGTCCGGATCGCCTCGGCCCGGC
CGTTTGTGCCGGACATGCAGGGCGGTGGGCTCGCGACCCGTGCGATCCGCGGCGACGTTCCGCTGCCGGAAGGGCGGCCG
TATTCGCTGGGCAATACCTCGGTTGATGTCGCCTCTGTCGGCGCGACCTCGGAAATCTCCGCCTCGCGCAGTTCGCGCAC
GGCTGGCCGAACACTGGCGCGCAATCAGCACGCTGTTTCCTACGACAGCAGCGGCAGCTACGCCGAGACCGCCGCTCGCG
CAGAGGCGCCGTCGCGCGCCAGTGACGAGATCGGCAGCCTGCTGTCGGCGCGCGGGCTGTACTGA

Upstream 100 bases:

>100_bases
GATATGGTCAAGGTTCGGTGCCGATGTGGGCCGGCATCGACGCGTGGCTCGCGCAGGTCCATATTGGGCTGCTGACCGCG
ACAATGGTATTTGGGGATCT

Downstream 100 bases:

>100_bases
GCCGCGGCTCACGTCACCTGTTTCAGGAAATCGATCAGCGCGGCATTCACCTCCGCGGGCTTCTCCTGCTGAATCCAGTG
GCCGGCGCCGTCGATGATCA

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 313

Protein sequence:

>314_residues
MGIRGRESLDRAARVVAAAGACLVLANCAQSGKFSRVDPKYGVSTSPRVVAMGEPVPKGGGTYRIGKPYVVGGRTYVPEE
DANYRAEGLASWYGDNFHGRLTANGEVFDMASLSAAHPTLPIPSYARVTNLSNGRSLVVRVNDRGPYHGNRLIDVSNRAA
DLLEFKHKGTARVRVEYVGRAPLEGSDDRQLVATLRTNEPAPAPATVRIASARPFVPDMQGGGLATRAIRGDVPLPEGRP
YSLGNTSVDVASVGATSEISASRSSRTAGRTLARNQHAVSYDSSGSYAETAARAEAPSRASDEIGSLLSARGLY

Sequences:

>Translated_314_residues
MGIRGRESLDRAARVVAAAGACLVLANCAQSGKFSRVDPKYGVSTSPRVVAMGEPVPKGGGTYRIGKPYVVGGRTYVPEE
DANYRAEGLASWYGDNFHGRLTANGEVFDMASLSAAHPTLPIPSYARVTNLSNGRSLVVRVNDRGPYHGNRLIDVSNRAA
DLLEFKHKGTARVRVEYVGRAPLEGSDDRQLVATLRTNEPAPAPATVRIASARPFVPDMQGGGLATRAIRGDVPLPEGRP
YSLGNTSVDVASVGATSEISASRSSRTAGRTLARNQHAVSYDSSGSYAETAARAEAPSRASDEIGSLLSARGLY
>Mature_313_residues
GIRGRESLDRAARVVAAAGACLVLANCAQSGKFSRVDPKYGVSTSPRVVAMGEPVPKGGGTYRIGKPYVVGGRTYVPEED
ANYRAEGLASWYGDNFHGRLTANGEVFDMASLSAAHPTLPIPSYARVTNLSNGRSLVVRVNDRGPYHGNRLIDVSNRAAD
LLEFKHKGTARVRVEYVGRAPLEGSDDRQLVATLRTNEPAPAPATVRIASARPFVPDMQGGGLATRAIRGDVPLPEGRPY
SLGNTSVDVASVGATSEISASRSSRTAGRTLARNQHAVSYDSSGSYAETAARAEAPSRASDEIGSLLSARGLY

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=182, Percent_Identity=38.4615384615385, Blast_Score=104, Evalue=9e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 33157; Mature: 33026

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIRGRESLDRAARVVAAAGACLVLANCAQSGKFSRVDPKYGVSTSPRVVAMGEPVPKGG
CCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC
GTYRIGKPYVVGGRTYVPEEDANYRAEGLASWYGDNFHGRLTANGEVFDMASLSAAHPTL
CEEECCCCEEECCEEECCCCCCCCCHHHHHHHCCCCCCEEEEECCCEEEECCCCCCCCCC
PIPSYARVTNLSNGRSLVVRVNDRGPYHGNRLIDVSNRAADLLEFKHKGTARVRVEYVGR
CCCCHHHEEECCCCCEEEEEECCCCCCCCCEEEEECCHHHHHHHHHCCCCEEEEEEEECC
APLEGSDDRQLVATLRTNEPAPAPATVRIASARPFVPDMQGGGLATRAIRGDVPLPEGRP
CCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCC
YSLGNTSVDVASVGATSEISASRSSRTAGRTLARNQHAVSYDSSGSYAETAARAEAPSRA
CCCCCCCEEEEECCCCCHHHCCCCCCHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCH
SDEIGSLLSARGLY
HHHHHHHHHHCCCC
>Mature Secondary Structure 
GIRGRESLDRAARVVAAAGACLVLANCAQSGKFSRVDPKYGVSTSPRVVAMGEPVPKGG
CCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC
GTYRIGKPYVVGGRTYVPEEDANYRAEGLASWYGDNFHGRLTANGEVFDMASLSAAHPTL
CEEECCCCEEECCEEECCCCCCCCCHHHHHHHCCCCCCEEEEECCCEEEECCCCCCCCCC
PIPSYARVTNLSNGRSLVVRVNDRGPYHGNRLIDVSNRAADLLEFKHKGTARVRVEYVGR
CCCCHHHEEECCCCCEEEEEECCCCCCCCCEEEEECCHHHHHHHHHCCCCEEEEEEEECC
APLEGSDDRQLVATLRTNEPAPAPATVRIASARPFVPDMQGGGLATRAIRGDVPLPEGRP
CCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCC
YSLGNTSVDVASVGATSEISASRSSRTAGRTLARNQHAVSYDSSGSYAETAARAEAPSRA
CCCCCCCEEEEECCCCCHHHCCCCCCHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCH
SDEIGSLLSARGLY
HHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]