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The map label for this gene is ihfA

Identifier: 86749768

GI number: 86749768

Start: 3030365

End: 3030736

Strand: Direct

Name: ihfA

Synonym: RPB_2651

Alternate gene names: 86749768

Gene position: 3030365-3030736 (Clockwise)

Preceding gene: 86749767

Following gene: 86749769

Centisome position: 56.84

GC content: 60.75

Gene sequence:

>372_bases
ATGACCGGAACCGGACGAACAGTCACACGTGTCGATCTTTGTGAGGCGGTCTACCAAAAGGTGGGCCTGTCACGCACGGA
GTCGTCGGCATTTGTCGAACTGGTATTGAAAGAGATCACCGACTGCCTCGAGAAGGGCGAGACGGTGAAGCTGTCGTCGT
TCGGTTCGTTTTTGGTGAGACAGAAGGGCCAGCGGATCGGCCGTAATCCCAAGACCGGGACCGAGGTGCCGATCTCGCCG
CGCCGCGTGATGGTGTTCAAGCCGTCCGCGATCCTCAAGCAGCGCATCAATGCCAACGGCACCGCATCGTCGATGTCGTC
GTCCGCCAATGCCGCGGCCGGCGACAAGTCCGAATCGGCATCCGGCACCTGA

Upstream 100 bases:

>100_bases
GCGTTCCATGCTATTCTGAATGTCGGCGGAGGTTGACCGCCGATTGTTAACCTCATAGTTTCAGCACGGATTTTTCTTTC
GCCGAGAGGTGGGGTAGGCG

Downstream 100 bases:

>100_bases
CGACAGGAGACTGCATTTGGACAAAGCGCCGGATGCATTCCGAACCATCAGCGAAGTCGCCGACGAACTCGACATTCCGC
AGCACGTCTTGAGGTTCTGG

Product: integration host factor subunit alpha

Products: NA

Alternate protein names: IHF-alpha

Number of amino acids: Translated: 123; Mature: 122

Protein sequence:

>123_residues
MTGTGRTVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFLVRQKGQRIGRNPKTGTEVPISP
RRVMVFKPSAILKQRINANGTASSMSSSANAAAGDKSESASGT

Sequences:

>Translated_123_residues
MTGTGRTVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFLVRQKGQRIGRNPKTGTEVPISP
RRVMVFKPSAILKQRINANGTASSMSSSANAAAGDKSESASGT
>Mature_122_residues
TGTGRTVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFLVRQKGQRIGRNPKTGTEVPISPR
RVMVFKPSAILKQRINANGTASSMSSSANAAAGDKSESASGT

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family

Homologues:

Organism=Escherichia coli, GI1788005, Length=89, Percent_Identity=48.314606741573, Blast_Score=97, Evalue=4e-22,
Organism=Escherichia coli, GI1790433, Length=89, Percent_Identity=34.8314606741573, Blast_Score=65, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IHFA_RHOP2 (Q2IWQ7)

Other databases:

- EMBL:   CP000250
- RefSeq:   YP_486264.1
- ProteinModelPortal:   Q2IWQ7
- SMR:   Q2IWQ7
- STRING:   Q2IWQ7
- GeneID:   3910443
- GenomeReviews:   CP000250_GR
- KEGG:   rpb:RPB_2651
- eggNOG:   COG0776
- HOGENOM:   HBG705085
- OMA:   RDKSARV
- ProtClustDB:   PRK00285
- BioCyc:   RPAL316058:RPB_2651-MONOMER
- GO:   GO:0006350
- HAMAP:   MF_00380
- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684
- Gene3D:   G3DSA:4.10.520.10
- PRINTS:   PR01727
- SMART:   SM00411
- TIGRFAMs:   TIGR00987

Pfam domain/function: PF00216 Bac_DNA_binding; SSF47729 IHF_like_DNA_bnd

EC number: NA

Molecular weight: Translated: 13070; Mature: 12939

Theoretical pI: Translated: 10.54; Mature: 10.54

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGTGRTVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFLVR
CCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHH
QKGQRIGRNPKTGTEVPISPRRVMVFKPSAILKQRINANGTASSMSSSANAAAGDKSESA
HHHHHHCCCCCCCCCCCCCCCEEEEECCHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCC
SGT
CCC
>Mature Secondary Structure 
TGTGRTVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFLVR
CCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHH
QKGQRIGRNPKTGTEVPISPRRVMVFKPSAILKQRINANGTASSMSSSANAAAGDKSESA
HHHHHHCCCCCCCCCCCCCCCEEEEECCHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCC
SGT
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA