Click here to switch to the map view.

The map label for this gene is nusB [H]

Identifier: 86749756

GI number: 86749756

Start: 3018911

End: 3019420

Strand: Direct

Name: nusB [H]

Synonym: RPB_2639

Alternate gene names: 86749756

Gene position: 3018911-3019420 (Clockwise)

Preceding gene: 162138521

Following gene: 86749757

Centisome position: 56.62

GC content: 66.27

Gene sequence:

>510_bases
ATGGCCGATTCCAAAAAGCCGGCGATCAAGAAGCCGGTCCCGAAGGGCGACCGCAAGGCCAATCGGCGCGGCGCTGCGCG
GCTCGCGGCCGTGCAGGCGCTCTACCAGATGGACATCGGCGGTGCCGGCATCAACGAGACCTTCGCCGAGTTCGAGAGCC
ACTGGATCGGCAACGAGGTCGAGGGTGATCAATATCTGCCGGCCGAGGCCGCGTTCTTCCGCGACGTCGTCTCCGGCGTG
GTGCGCGACCAGAAGAAGCTCGACCCGTTGATCGACGACGCGCTGGCGAAGGGCTGGCCGCTGGCGCGGATCGACGCCAT
CCTCCGCGCGGTGATGCGTGCCGGCGCCTACGAGCTCGAACACCGCAAGGATATCCCGGCGCGCGTCGTCGTCTCCGAAT
ATGTCGACGTCGCCCACGCCTTCGTCGAGAAGGACGAGACAGGCATGGTCAACGCCGTGCTCGACCAGATCGCCCGGCAG
TTTCGTGAAGACGAGTTTACGCGGGGGTAG

Upstream 100 bases:

>100_bases
GGGCGCGAGCAAAGCCCGACGATCTCAACAAGGGCGGTGACGCCGCGCGCGCCGCGCTGGCGATGCTGCGGATCAAGCGC
CGACTGGCGCGGGGCTGACG

Downstream 100 bases:

>100_bases
GCCGAGCGCCGCTGCCTAACCTCTCCCCGTGTGCGGGGAGAGGTCGACCCGGCGGAGCGCAGCGAAGCCGGGGCGGGTGA
GGGGGCGTCTCGACGCGGCC

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB [H]

Number of amino acids: Translated: 169; Mature: 168

Protein sequence:

>169_residues
MADSKKPAIKKPVPKGDRKANRRGAARLAAVQALYQMDIGGAGINETFAEFESHWIGNEVEGDQYLPAEAAFFRDVVSGV
VRDQKKLDPLIDDALAKGWPLARIDAILRAVMRAGAYELEHRKDIPARVVVSEYVDVAHAFVEKDETGMVNAVLDQIARQ
FREDEFTRG

Sequences:

>Translated_169_residues
MADSKKPAIKKPVPKGDRKANRRGAARLAAVQALYQMDIGGAGINETFAEFESHWIGNEVEGDQYLPAEAAFFRDVVSGV
VRDQKKLDPLIDDALAKGWPLARIDAILRAVMRAGAYELEHRKDIPARVVVSEYVDVAHAFVEKDETGMVNAVLDQIARQ
FREDEFTRG
>Mature_168_residues
ADSKKPAIKKPVPKGDRKANRRGAARLAAVQALYQMDIGGAGINETFAEFESHWIGNEVEGDQYLPAEAAFFRDVVSGVV
RDQKKLDPLIDDALAKGWPLARIDAILRAVMRAGAYELEHRKDIPARVVVSEYVDVAHAFVEKDETGMVNAVLDQIARQF
REDEFTRG

Specific function: Involved in the transcription termination process [H]

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family [H]

Homologues:

Organism=Escherichia coli, GI1786618, Length=137, Percent_Identity=29.1970802919708, Blast_Score=60, Evalue=7e-11,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011605
- InterPro:   IPR006027 [H]

Pfam domain/function: PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 18766; Mature: 18634

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADSKKPAIKKPVPKGDRKANRRGAARLAAVQALYQMDIGGAGINETFAEFESHWIGNEV
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCC
EGDQYLPAEAAFFRDVVSGVVRDQKKLDPLIDDALAKGWPLARIDAILRAVMRAGAYELE
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHH
HRKDIPARVVVSEYVDVAHAFVEKDETGMVNAVLDQIARQFREDEFTRG
HHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
ADSKKPAIKKPVPKGDRKANRRGAARLAAVQALYQMDIGGAGINETFAEFESHWIGNEV
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCC
EGDQYLPAEAAFFRDVVSGVVRDQKKLDPLIDDALAKGWPLARIDAILRAVMRAGAYELE
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHH
HRKDIPARVVVSEYVDVAHAFVEKDETGMVNAVLDQIARQFREDEFTRG
HHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA