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The map label for this gene is ydaM [H]

Identifier: 86749641

GI number: 86749641

Start: 2880002

End: 2881054

Strand: Reverse

Name: ydaM [H]

Synonym: RPB_2521

Alternate gene names: 86749641

Gene position: 2881054-2880002 (Counterclockwise)

Preceding gene: 86749643

Following gene: 86749640

Centisome position: 54.04

GC content: 67.71

Gene sequence:

>1053_bases
ATGCCGACAACAACAACAAAGCCGTCCTCGGGAGACGAAACGCCGGCGGGATCGTCGATCGATCCGGCCGAAGCCGCGCG
CCTGCGGCACGAGCTGCGCGAGGCCAGCCAGGCGCTCGAGACGCTCTACGCCGCGCTCGACAATGTCGACAGCGGCCTGC
TGATCCTCAACAAAGAGCTGCGCGCGGTCTACAGCAATCCGATCCTGCACGTGATGTTCCGGGCCAACAGTTGCGAGGAG
ATCCGGCAGACGCGGCCGTTCTACGCCGACATGCTGGCGGCCGCGGCCCAGGCGGTCGCGGTCGATCTCGACGACTACGT
CGCGCGCCGGCTGGCCTGGGTGCAGTCCGGCGATCCGAAGCCGATGGATCTGGCGATGATCGACGGCAAGGCGCTGCGCT
GCCATCTCGCCGTGCTGCCGGACGGCGGCCGCATGCTGATCTACAGCGACGTCACCGACATCGTGCGCAACGCCGAAGAG
CTCGAGCGGCTGGCGACGACCGACGGCATGACGGGGATCTTCAACCGCCGGCACTTTCTGACGCTGGCCGATCGCGAATG
GGCGCGCGCCCGCCGCTATGGTCGGCCGTTGTCGTGCCTGATGATCGACATCGACCATTTCAAATCGATCAACGACGATT
TCGGCCATCAGGTCGGCGACGACATGATCGTGCATCTGGCGAAATTGGCGCGCGACTGCAAGCGCGACTGCGACGTGCTC
GCCCGGATCGGCGGCGAGGAATTCGCGCTGCTGCTGCCAGAGACCGATCTGCCGCAGGCGCTGGCGGTGGCGGAACGACT
GCGCGGCGAGGTCGCCGCCAGTTCATTGCTGATGGCCTCGGGTTCGGTCCGCGCCACCGTCAGCATCGGCGCGGCGACGT
CGGCCGCGACCATCGACGGCATTTCCGATCTGATGCGGGCCGCCGATCGCGCCCTCTACGAGGCCAAGCACGGCGGACGC
AACCGGGTGGTCTGTCACGTCTCGCCCGACGCGGTGCCGAGTGTCGCGGCGCCATGCCTCGATCCGTCGCTCACGGCGGC
GCGCCTCTCCTAA

Upstream 100 bases:

>100_bases
GAGCTAACTACCAGCCGCGATCGCGCCGGCCATTCAGGGGTTGTTATCTGCGCTTATGCAACCAATGCTGCATTGGACAA
TTGCTTCGGCGGGACTGACC

Downstream 100 bases:

>100_bases
CCGCATTCAGGAAGCGATCGGCCGCAGCCGTCGAGCGCGCCGGTGATTCCGGGCGCGACTTGCCCGCCGCGCAGCACGCA
CGCTGCCGCTGCCTTTAGCT

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 350; Mature: 349

Protein sequence:

>350_residues
MPTTTTKPSSGDETPAGSSIDPAEAARLRHELREASQALETLYAALDNVDSGLLILNKELRAVYSNPILHVMFRANSCEE
IRQTRPFYADMLAAAAQAVAVDLDDYVARRLAWVQSGDPKPMDLAMIDGKALRCHLAVLPDGGRMLIYSDVTDIVRNAEE
LERLATTDGMTGIFNRRHFLTLADREWARARRYGRPLSCLMIDIDHFKSINDDFGHQVGDDMIVHLAKLARDCKRDCDVL
ARIGGEEFALLLPETDLPQALAVAERLRGEVAASSLLMASGSVRATVSIGAATSAATIDGISDLMRAADRALYEAKHGGR
NRVVCHVSPDAVPSVAAPCLDPSLTAARLS

Sequences:

>Translated_350_residues
MPTTTTKPSSGDETPAGSSIDPAEAARLRHELREASQALETLYAALDNVDSGLLILNKELRAVYSNPILHVMFRANSCEE
IRQTRPFYADMLAAAAQAVAVDLDDYVARRLAWVQSGDPKPMDLAMIDGKALRCHLAVLPDGGRMLIYSDVTDIVRNAEE
LERLATTDGMTGIFNRRHFLTLADREWARARRYGRPLSCLMIDIDHFKSINDDFGHQVGDDMIVHLAKLARDCKRDCDVL
ARIGGEEFALLLPETDLPQALAVAERLRGEVAASSLLMASGSVRATVSIGAATSAATIDGISDLMRAADRALYEAKHGGR
NRVVCHVSPDAVPSVAAPCLDPSLTAARLS
>Mature_349_residues
PTTTTKPSSGDETPAGSSIDPAEAARLRHELREASQALETLYAALDNVDSGLLILNKELRAVYSNPILHVMFRANSCEEI
RQTRPFYADMLAAAAQAVAVDLDDYVARRLAWVQSGDPKPMDLAMIDGKALRCHLAVLPDGGRMLIYSDVTDIVRNAEEL
ERLATTDGMTGIFNRRHFLTLADREWARARRYGRPLSCLMIDIDHFKSINDDFGHQVGDDMIVHLAKLARDCKRDCDVLA
RIGGEEFALLLPETDLPQALAVAERLRGEVAASSLLMASGSVRATVSIGAATSAATIDGISDLMRAADRALYEAKHGGRN
RVVCHVSPDAVPSVAAPCLDPSLTAARLS

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=215, Percent_Identity=38.6046511627907, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1786584, Length=176, Percent_Identity=39.2045454545455, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI145693134, Length=157, Percent_Identity=42.0382165605096, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI87082007, Length=167, Percent_Identity=39.5209580838323, Blast_Score=114, Evalue=8e-27,
Organism=Escherichia coli, GI1787262, Length=165, Percent_Identity=38.7878787878788, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1788085, Length=182, Percent_Identity=35.1648351648352, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1788381, Length=337, Percent_Identity=24.9258160237389, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1787802, Length=130, Percent_Identity=36.9230769230769, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1787541, Length=227, Percent_Identity=29.0748898678414, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787816, Length=160, Percent_Identity=30.625, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI87081977, Length=168, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI87081974, Length=171, Percent_Identity=26.3157894736842, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787056, Length=190, Percent_Identity=27.8947368421053, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 37963; Mature: 37831

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTTTTKPSSGDETPAGSSIDPAEAARLRHELREASQALETLYAALDNVDSGLLILNKEL
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHH
RAVYSNPILHVMFRANSCEEIRQTRPFYADMLAAAAQAVAVDLDDYVARRLAWVQSGDPK
HHHHCCCEEEEEECCCCHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC
PMDLAMIDGKALRCHLAVLPDGGRMLIYSDVTDIVRNAEELERLATTDGMTGIFNRRHFL
CCEEEEECCCEEEEEEEEECCCCCEEEECCHHHHHHCHHHHHHHHHCCCCHHHCCCCEEE
TLADREWARARRYGRPLSCLMIDIDHFKSINDDFGHQVGDDMIVHLAKLARDCKRDCDVL
EECCHHHHHHHHCCCCEEEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARIGGEEFALLLPETDLPQALAVAERLRGEVAASSLLMASGSVRATVSIGAATSAATIDG
HHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHH
ISDLMRAADRALYEAKHGGRNRVVCHVSPDAVPSVAAPCLDPSLTAARLS
HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCCCCHHHCCC
>Mature Secondary Structure 
PTTTTKPSSGDETPAGSSIDPAEAARLRHELREASQALETLYAALDNVDSGLLILNKEL
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHH
RAVYSNPILHVMFRANSCEEIRQTRPFYADMLAAAAQAVAVDLDDYVARRLAWVQSGDPK
HHHHCCCEEEEEECCCCHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC
PMDLAMIDGKALRCHLAVLPDGGRMLIYSDVTDIVRNAEELERLATTDGMTGIFNRRHFL
CCEEEEECCCEEEEEEEEECCCCCEEEECCHHHHHHCHHHHHHHHHCCCCHHHCCCCEEE
TLADREWARARRYGRPLSCLMIDIDHFKSINDDFGHQVGDDMIVHLAKLARDCKRDCDVL
EECCHHHHHHHHCCCCEEEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARIGGEEFALLLPETDLPQALAVAERLRGEVAASSLLMASGSVRATVSIGAATSAATIDG
HHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHH
ISDLMRAADRALYEAKHGGRNRVVCHVSPDAVPSVAAPCLDPSLTAARLS
HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]