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The map label for this gene is yciR [C]

Identifier: 86749640

GI number: 86749640

Start: 2878678

End: 2879829

Strand: Reverse

Name: yciR [C]

Synonym: RPB_2520

Alternate gene names: 86749640

Gene position: 2879829-2878678 (Counterclockwise)

Preceding gene: 86749641

Following gene: 86749639

Centisome position: 54.01

GC content: 70.05

Gene sequence:

>1152_bases
ATGGTGCCGTCCATGCCCATCACGGTGTTGTCCAGGTTCCTGCATCCCGATCCGCGGATTCGCCGCGAGCTGGTCGATCT
GCTGTACACATCGCTGCCGCAGGTGATGGCGATCAGCGTCACCTCGGTGATCGGCGCGGTCGCGCTCGCGCTGATCGACG
GCGATCCCGGCTACGCGGTGATCGCGGTGCTGATCCTGATCGCCGCCTCGGCGCGGATCGCCTCGCTGCTGCGCTACAAA
TCCCGCGCTGGGCAATTGTCCGATGCCGACGTGGTGCGCTGGGAGCGGATCTACGGCGCCGGCGCCTGCGCCTTCAGCCT
CGCGCTCGGCGCGCTGTCCTATCGGACGTTGCATCTCGGCGACGCGCCCGGCGCCTGGCTGGCGTTCGGCCTATCGATGT
CGTTCTGCGTCGGCATGGTGTCGCGCGCGGCGATCCGGCCCTGGGTCATTCTGACCGCTGCGGCGACCCTGCTGCTGCCG
ACCGTCGTCGCCGGGCTGATGCGTCCCGAGCTCACCTACAATGTCGGCGCCGTCATGCTGGTGTTCTTCTGGCTCACCTT
GCGCGAAGCCTCCAAGCATCTCAGCGCCGCCTTCGTCGAGCGCCTCGAAGCCCGGCATCGGCTGGCGCTGCAGGCGACCC
ACGATTTCCTCACCGGTCTGCCGAACCGCGCCGCGTTTCTGCAATCGCTCGCCAGCATCGGCGGCGGCCATTTCGCCATC
ATCGCGATCGATCTCGACGGCTTCAAGCCGATCAACGACCGTCACGGTCATCACGCCGGCGACGATCTGCTGCGCCAGGT
CGCGGAGCGGCTGACCGCCTGCGCCGGCGCCGACGGAATCGCCGCGCGCTTCGGCGGCGACGAATTCATGCTGCTGGCCC
CGGTCGCCGCCGGCGAGGACGGCCGCGCCGAGGCGCTGGCGCTGGCGCGCAGGGCGATTGTCGACCTCTCGATGCCCTAT
CGGCTGTCGGACCTGCCGGTTTGCATCGGCGCCAGCGCCGGCATTCTGGTCAGCGACGGCGGCGTTGCCGACGGCGCGAC
GTCGCAACTGCTGCAGCGCGTCGACCGCGCGCTGTATGCCGCCAAGCGCGGCGGGGGCGGCTATGCCTGGGCCGACGCGG
ATGACGAGCCCGCACGCCGCGCGGCGGTCTAG

Upstream 100 bases:

>100_bases
AGCACGCACGCTGCCGCTGCCTTTAGCTATTCTTAACGACGACCTCACCGGCATCACACTGCGCACTCTCTTACCTACGG
GATGTTAGGAACTCGCCGAC

Downstream 100 bases:

>100_bases
ACATTCCCGCTGCGTACCCCTTGCCAATCGCCGCGCCTGCGCCAATCTCAGCTTTCCGCCGCAACGACAATCCGAAACAG
CCGGAGCCCCGCATGACCGA

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 383; Mature: 383

Protein sequence:

>383_residues
MVPSMPITVLSRFLHPDPRIRRELVDLLYTSLPQVMAISVTSVIGAVALALIDGDPGYAVIAVLILIAASARIASLLRYK
SRAGQLSDADVVRWERIYGAGACAFSLALGALSYRTLHLGDAPGAWLAFGLSMSFCVGMVSRAAIRPWVILTAAATLLLP
TVVAGLMRPELTYNVGAVMLVFFWLTLREASKHLSAAFVERLEARHRLALQATHDFLTGLPNRAAFLQSLASIGGGHFAI
IAIDLDGFKPINDRHGHHAGDDLLRQVAERLTACAGADGIAARFGGDEFMLLAPVAAGEDGRAEALALARRAIVDLSMPY
RLSDLPVCIGASAGILVSDGGVADGATSQLLQRVDRALYAAKRGGGGYAWADADDEPARRAAV

Sequences:

>Translated_383_residues
MVPSMPITVLSRFLHPDPRIRRELVDLLYTSLPQVMAISVTSVIGAVALALIDGDPGYAVIAVLILIAASARIASLLRYK
SRAGQLSDADVVRWERIYGAGACAFSLALGALSYRTLHLGDAPGAWLAFGLSMSFCVGMVSRAAIRPWVILTAAATLLLP
TVVAGLMRPELTYNVGAVMLVFFWLTLREASKHLSAAFVERLEARHRLALQATHDFLTGLPNRAAFLQSLASIGGGHFAI
IAIDLDGFKPINDRHGHHAGDDLLRQVAERLTACAGADGIAARFGGDEFMLLAPVAAGEDGRAEALALARRAIVDLSMPY
RLSDLPVCIGASAGILVSDGGVADGATSQLLQRVDRALYAAKRGGGGYAWADADDEPARRAAV
>Mature_383_residues
MVPSMPITVLSRFLHPDPRIRRELVDLLYTSLPQVMAISVTSVIGAVALALIDGDPGYAVIAVLILIAASARIASLLRYK
SRAGQLSDADVVRWERIYGAGACAFSLALGALSYRTLHLGDAPGAWLAFGLSMSFCVGMVSRAAIRPWVILTAAATLLLP
TVVAGLMRPELTYNVGAVMLVFFWLTLREASKHLSAAFVERLEARHRLALQATHDFLTGLPNRAAFLQSLASIGGGHFAI
IAIDLDGFKPINDRHGHHAGDDLLRQVAERLTACAGADGIAARFGGDEFMLLAPVAAGEDGRAEALALARRAIVDLSMPY
RLSDLPVCIGASAGILVSDGGVADGATSQLLQRVDRALYAAKRGGGGYAWADADDEPARRAAV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=174, Percent_Identity=35.632183908046, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI1788381, Length=169, Percent_Identity=37.8698224852071, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI87081977, Length=177, Percent_Identity=37.2881355932203, Blast_Score=89, Evalue=7e-19,
Organism=Escherichia coli, GI87082007, Length=203, Percent_Identity=33.9901477832512, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI87081881, Length=172, Percent_Identity=36.046511627907, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787802, Length=168, Percent_Identity=30.3571428571429, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI145693134, Length=197, Percent_Identity=29.9492385786802, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788956, Length=172, Percent_Identity=32.5581395348837, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 40531; Mature: 40531

Theoretical pI: Translated: 7.64; Mature: 7.64

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVPSMPITVLSRFLHPDPRIRRELVDLLYTSLPQVMAISVTSVIGAVALALIDGDPGYAV
CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHH
IAVLILIAASARIASLLRYKSRAGQLSDADVVRWERIYGAGACAFSLALGALSYRTLHLG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHEEEEEC
DAPGAWLAFGLSMSFCVGMVSRAAIRPWVILTAAATLLLPTVVAGLMRPELTYNVGAVML
CCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
VFFWLTLREASKHLSAAFVERLEARHRLALQATHDFLTGLPNRAAFLQSLASIGGGHFAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEE
IAIDLDGFKPINDRHGHHAGDDLLRQVAERLTACAGADGIAARFGGDEFMLLAPVAAGED
EEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEECCCCCCEEEEEEEECCCC
GRAEALALARRAIVDLSMPYRLSDLPVCIGASAGILVSDGGVADGATSQLLQRVDRALYA
CHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEECCCCCCCHHHHHHHHHHHHHHH
AKRGGGGYAWADADDEPARRAAV
HHCCCCCEEECCCCCCCHHHCCC
>Mature Secondary Structure
MVPSMPITVLSRFLHPDPRIRRELVDLLYTSLPQVMAISVTSVIGAVALALIDGDPGYAV
CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHH
IAVLILIAASARIASLLRYKSRAGQLSDADVVRWERIYGAGACAFSLALGALSYRTLHLG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHEEEEEC
DAPGAWLAFGLSMSFCVGMVSRAAIRPWVILTAAATLLLPTVVAGLMRPELTYNVGAVML
CCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
VFFWLTLREASKHLSAAFVERLEARHRLALQATHDFLTGLPNRAAFLQSLASIGGGHFAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEE
IAIDLDGFKPINDRHGHHAGDDLLRQVAERLTACAGADGIAARFGGDEFMLLAPVAAGED
EEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEECCCCCCEEEEEEEECCCC
GRAEALALARRAIVDLSMPYRLSDLPVCIGASAGILVSDGGVADGATSQLLQRVDRALYA
CHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEECCCCCCCHHHHHHHHHHHHHHH
AKRGGGGYAWADADDEPARRAAV
HHCCCCCEEECCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]