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The map label for this gene is yciR [C]

Identifier: 86749480

GI number: 86749480

Start: 2714499

End: 2715440

Strand: Direct

Name: yciR [C]

Synonym: RPB_2360

Alternate gene names: 86749480

Gene position: 2714499-2715440 (Clockwise)

Preceding gene: 86749479

Following gene: 86749481

Centisome position: 50.91

GC content: 67.09

Gene sequence:

>942_bases
ATGAGGGAAGACCCTGCTGCCTCGGTGTCGTCGGACGAGGTTCGCTTACGGCTGTATGATCAGGCCCTGAATGCCGCTCG
CATCGGCGTCTGGGAATGTGACATCGAGACCGAGCGTCTGAGCTGGACCTCGGGCGTCTACGAGATCTTCGGCTATCCGA
TGGCCAACCCGCTGCGGCGCGCCAACATCGTCGACCTCTACATCGATGAATCGCGGCGGAACATGGAACTCGCGCGTGCC
GAGGTGATCCGGAGCGGGCGCCCGGTCTCGCTCGACGCCGAGATCAGAACCTGGCGCGGCGAAAGGCGCTGGATGCGCCT
GTGGATCAACGCGATGCGGGAGGGCGAGCGGCCGGCGCGGATCTTCGGCTGCAAACAGGACGTCACCTCCGACCGACACG
TGATCGAGAGCCTCCGGCAGCAGGCCGAAACCGATCCGCTCACCGGGCTCGCCAATCGGACCATTTTCCAGGTGCGCTAT
CGCGAGGTCGTGGACGACAGCCTGAATCACGGCTTCGCGTCGGCGCTCGTGCTGATCGACCTCGATGGCTTCAAGGATCT
CAACGATACGCACGGCCATCTGGCCGGAGACGCCTGCCTGTGCGAGGTCGCGCAGCGGCTGCGGCGGGCGTTCCACAATG
CCGGCCTGGTCGGCCGGCTCGGCGGCGACGAATTCGCCATCATCCTGCGGGCGCCGACAGCTCCCGCGCGGATCGCCGAG
GTGCTGCAGCAGACCCTCGTGATGTTGAGCCGACCGATGTTCTGGAACGGTCTTCGCATCGAGGTCAGCGCCTCGATCGG
CGCGGCTCTGGTCGGCCGACCGCATCGGCGGCGGATCGCCGACCTGTTCGCGGAAGCCGATGTCGCGCTGTACCGGGCCA
AGGCCGCCGGCCGCAACCGGGTCCATCTGGTCGGCGACGACGCGCAAAGCCGGGCGGCTTAG

Upstream 100 bases:

>100_bases
CGCCTATGCGTCGCGGACGCGGGCCGGCATATAGGATTCGTTAACGCGGCAGCCCTAGTCCTTGGGTACGCAGATAAGGT
CGTGGAATGTCGGATCGCCG

Downstream 100 bases:

>100_bases
CGCAACAACCTTGCTGACCGTGGCGCGCTCGGAAGGATTCGAACCTCCGACCCTCGGAATCGAAATCCGATGCTCTATCC
AGCTGAGCTACGAGCGCCTG

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MREDPAASVSSDEVRLRLYDQALNAARIGVWECDIETERLSWTSGVYEIFGYPMANPLRRANIVDLYIDESRRNMELARA
EVIRSGRPVSLDAEIRTWRGERRWMRLWINAMREGERPARIFGCKQDVTSDRHVIESLRQQAETDPLTGLANRTIFQVRY
REVVDDSLNHGFASALVLIDLDGFKDLNDTHGHLAGDACLCEVAQRLRRAFHNAGLVGRLGGDEFAIILRAPTAPARIAE
VLQQTLVMLSRPMFWNGLRIEVSASIGAALVGRPHRRRIADLFAEADVALYRAKAAGRNRVHLVGDDAQSRAA

Sequences:

>Translated_313_residues
MREDPAASVSSDEVRLRLYDQALNAARIGVWECDIETERLSWTSGVYEIFGYPMANPLRRANIVDLYIDESRRNMELARA
EVIRSGRPVSLDAEIRTWRGERRWMRLWINAMREGERPARIFGCKQDVTSDRHVIESLRQQAETDPLTGLANRTIFQVRY
REVVDDSLNHGFASALVLIDLDGFKDLNDTHGHLAGDACLCEVAQRLRRAFHNAGLVGRLGGDEFAIILRAPTAPARIAE
VLQQTLVMLSRPMFWNGLRIEVSASIGAALVGRPHRRRIADLFAEADVALYRAKAAGRNRVHLVGDDAQSRAA
>Mature_313_residues
MREDPAASVSSDEVRLRLYDQALNAARIGVWECDIETERLSWTSGVYEIFGYPMANPLRRANIVDLYIDESRRNMELARA
EVIRSGRPVSLDAEIRTWRGERRWMRLWINAMREGERPARIFGCKQDVTSDRHVIESLRQQAETDPLTGLANRTIFQVRY
REVVDDSLNHGFASALVLIDLDGFKDLNDTHGHLAGDACLCEVAQRLRRAFHNAGLVGRLGGDEFAIILRAPTAPARIAE
VLQQTLVMLSRPMFWNGLRIEVSASIGAALVGRPHRRRIADLFAEADVALYRAKAAGRNRVHLVGDDAQSRAA

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=244, Percent_Identity=29.5081967213115, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1788381, Length=178, Percent_Identity=35.3932584269663, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1786584, Length=168, Percent_Identity=32.7380952380952, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI87081881, Length=197, Percent_Identity=35.0253807106599, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI145693134, Length=184, Percent_Identity=35.3260869565217, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1787802, Length=187, Percent_Identity=31.5508021390374, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI87082007, Length=184, Percent_Identity=32.6086956521739, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788956, Length=162, Percent_Identity=34.5679012345679, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787816, Length=216, Percent_Identity=28.7037037037037, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787262, Length=191, Percent_Identity=31.413612565445, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1787056, Length=128, Percent_Identity=36.71875, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87081977, Length=104, Percent_Identity=41.3461538461538, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87081974, Length=105, Percent_Identity=33.3333333333333, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 35242; Mature: 35242

Theoretical pI: Translated: 8.00; Mature: 8.00

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREDPAASVSSDEVRLRLYDQALNAARIGVWECDIETERLSWTSGVYEIFGYPMANPLRR
CCCCCCCCCCCCHHEEEEHHHHHCHHHCEEEEECCCHHHHHHHHHHHHHHCCCCCCCHHH
ANIVDLYIDESRRNMELARAEVIRSGRPVSLDAEIRTWRGERRWMRLWINAMREGERPAR
CCEEEEEECCCCCHHHHHHHHHHHCCCCEEECCHHHHHCCHHHHHHHHHHHHHCCCCCCE
IFGCKQDVTSDRHVIESLRQQAETDPLTGLANRTIFQVRYREVVDDSLNHGFASALVLID
EECCHHHCCCHHHHHHHHHHHHCCCCCCHHCCCHHHHHHHHHHHHHHHCCCCEEEEEEEE
LDGFKDLNDTHGHLAGDACLCEVAQRLRRAFHNAGLVGRLGGDEFAIILRAPTAPARIAE
ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCEEEEEEECCCCHHHHHH
VLQQTLVMLSRPMFWNGLRIEVSASIGAALVGRPHRRRIADLFAEADVALYRAKAAGRNR
HHHHHHHHHCCCCEECCEEEEEECCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCE
VHLVGDDAQSRAA
EEEECCCHHCCCC
>Mature Secondary Structure
MREDPAASVSSDEVRLRLYDQALNAARIGVWECDIETERLSWTSGVYEIFGYPMANPLRR
CCCCCCCCCCCCHHEEEEHHHHHCHHHCEEEEECCCHHHHHHHHHHHHHHCCCCCCCHHH
ANIVDLYIDESRRNMELARAEVIRSGRPVSLDAEIRTWRGERRWMRLWINAMREGERPAR
CCEEEEEECCCCCHHHHHHHHHHHCCCCEEECCHHHHHCCHHHHHHHHHHHHHCCCCCCE
IFGCKQDVTSDRHVIESLRQQAETDPLTGLANRTIFQVRYREVVDDSLNHGFASALVLID
EECCHHHCCCHHHHHHHHHHHHCCCCCCHHCCCHHHHHHHHHHHHHHHCCCCEEEEEEEE
LDGFKDLNDTHGHLAGDACLCEVAQRLRRAFHNAGLVGRLGGDEFAIILRAPTAPARIAE
ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCEEEEEEECCCCHHHHHH
VLQQTLVMLSRPMFWNGLRIEVSASIGAALVGRPHRRRIADLFAEADVALYRAKAAGRNR
HHHHHHHHHCCCCEECCEEEEEECCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCE
VHLVGDDAQSRAA
EEEECCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]