Definition Rhodopseudomonas palustris HaA2, complete genome.
Accession NC_007778
Length 5,331,656

Click here to switch to the map view.

The map label for this gene is 86749479

Identifier: 86749479

GI number: 86749479

Start: 2713504

End: 2714376

Strand: Direct

Name: 86749479

Synonym: RPB_2359

Alternate gene names: NA

Gene position: 2713504-2714376 (Clockwise)

Preceding gene: 86749476

Following gene: 86749480

Centisome position: 50.89

GC content: 67.35

Gene sequence:

>873_bases
GTGAGCCTTCGGACTCATCTCGTGGTGATCGATCCGCAGAACGACTTCATGGACATCGGTGCGGAGGCAGGGGAGTCGGT
TAGCCTCGCGCTGCCGGACGGGACGGGCTTTCGGTCGGCCCTTCCGGTGCCCGGTGCGCTCGCCGACATGGATCGCCTCG
CGACCACGATCGGCCGGCTCGGCGGGCGGCTGGCGCGAATTCACGTCACGCTGGATTCGCATCGGGTCATCGACGTCGCG
CATCCGGCGTTCTGGCGCGACAGCGACGGCCGTCCGCCGCCGCCCTTCACGATGATTACCACTGCCGAGATTGAAGCCGG
CATCTGGGCGCCGCGCAACCCGGCCTGGCGTAACCGGATGCTGGACTACACGGCCGAGTTGCAGCGCGCCGGCAAATTCG
TGCTGATGATCTGGCCGGAGCATTGCCTGATCGGAAGCTGGGGCCACAACATCGTCGACAATCTGCGCGCCGCGATGGCG
CGCTGGGAGCGTGATCAGTGCGCGACGGTCGACTACATCATCAAAGGTACCAACATGTTCACCGAGCACTACGGCGCGCT
GCTGGCCGAGGTGCCCGATCCGGCCGACCCGGCGACGCAACTCAACCGCGACATCGTTGCGGCGCTGGAGGAGGCCGACA
TGATCGCGATCGCCGGCGAGGCGTCGTCGCACTGCGTGGCGGCGACCATCCGGCAGATCGTCGACCACATCGGTGACCGG
CATCTGCCGAAGATCCACATCCTGACCGACTGCATGTCGCCGGTGCCGGCGTCGCCCGGATCGCCGGATTTCCCGGCGCT
CGCCGCGCAGTTCGCCAGCGACATGGCCGCACGCGGCCTGGTGCTGACCACGTCGGACGCATTTCTGGCCTGA

Upstream 100 bases:

>100_bases
TCGATCAGTGTGACGATTTGCGGTCGAAGTACAATGAGAGTCATTCGCACGATCCGCGCCGGCGCTGTGGTCATCGGGCA
GAGACGACAGGAGATATCGT

Downstream 100 bases:

>100_bases
GCCGGCCCGTCCGTTCAGCGGCCGCCTATGCGTCGCGGACGCGGGCCGGCATATAGGATTCGTTAACGCGGCAGCCCTAG
TCCTTGGGTACGCAGATAAG

Product: hypothetical protein

Products: nicotinate; NH3

Alternate protein names: None

Number of amino acids: Translated: 290; Mature: 289

Protein sequence:

>290_residues
MSLRTHLVVIDPQNDFMDIGAEAGESVSLALPDGTGFRSALPVPGALADMDRLATTIGRLGGRLARIHVTLDSHRVIDVA
HPAFWRDSDGRPPPPFTMITTAEIEAGIWAPRNPAWRNRMLDYTAELQRAGKFVLMIWPEHCLIGSWGHNIVDNLRAAMA
RWERDQCATVDYIIKGTNMFTEHYGALLAEVPDPADPATQLNRDIVAALEEADMIAIAGEASSHCVAATIRQIVDHIGDR
HLPKIHILTDCMSPVPASPGSPDFPALAAQFASDMAARGLVLTTSDAFLA

Sequences:

>Translated_290_residues
MSLRTHLVVIDPQNDFMDIGAEAGESVSLALPDGTGFRSALPVPGALADMDRLATTIGRLGGRLARIHVTLDSHRVIDVA
HPAFWRDSDGRPPPPFTMITTAEIEAGIWAPRNPAWRNRMLDYTAELQRAGKFVLMIWPEHCLIGSWGHNIVDNLRAAMA
RWERDQCATVDYIIKGTNMFTEHYGALLAEVPDPADPATQLNRDIVAALEEADMIAIAGEASSHCVAATIRQIVDHIGDR
HLPKIHILTDCMSPVPASPGSPDFPALAAQFASDMAARGLVLTTSDAFLA
>Mature_289_residues
SLRTHLVVIDPQNDFMDIGAEAGESVSLALPDGTGFRSALPVPGALADMDRLATTIGRLGGRLARIHVTLDSHRVIDVAH
PAFWRDSDGRPPPPFTMITTAEIEAGIWAPRNPAWRNRMLDYTAELQRAGKFVLMIWPEHCLIGSWGHNIVDNLRAAMAR
WERDQCATVDYIIKGTNMFTEHYGALLAEVPDPADPATQLNRDIVAALEEADMIAIAGEASSHCVAATIRQIVDHIGDRH
LPKIHILTDCMSPVPASPGSPDFPALAAQFASDMAARGLVLTTSDAFLA

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.5.1.19

Molecular weight: Translated: 31468; Mature: 31337

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLRTHLVVIDPQNDFMDIGAEAGESVSLALPDGTGFRSALPVPGALADMDRLATTIGRL
CCCEEEEEEECCCCCHHHCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
GGRLARIHVTLDSHRVIDVAHPAFWRDSDGRPPPPFTMITTAEIEAGIWAPRNPAWRNRM
CCEEEEEEEEECCCEEEEECCCCEECCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHH
LDYTAELQRAGKFVLMIWPEHCLIGSWGHNIVDNLRAAMARWERDQCATVDYIIKGTNMF
HHHHHHHHHCCCEEEEECCCCEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHH
TEHYGALLAEVPDPADPATQLNRDIVAALEEADMIAIAGEASSHCVAATIRQIVDHIGDR
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCC
HLPKIHILTDCMSPVPASPGSPDFPALAAQFASDMAARGLVLTTSDAFLA
CCCEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEECCCHHCC
>Mature Secondary Structure 
SLRTHLVVIDPQNDFMDIGAEAGESVSLALPDGTGFRSALPVPGALADMDRLATTIGRL
CCEEEEEEECCCCCHHHCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
GGRLARIHVTLDSHRVIDVAHPAFWRDSDGRPPPPFTMITTAEIEAGIWAPRNPAWRNRM
CCEEEEEEEEECCCEEEEECCCCEECCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHH
LDYTAELQRAGKFVLMIWPEHCLIGSWGHNIVDNLRAAMARWERDQCATVDYIIKGTNMF
HHHHHHHHHCCCEEEEECCCCEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHH
TEHYGALLAEVPDPADPATQLNRDIVAALEEADMIAIAGEASSHCVAATIRQIVDHIGDR
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCC
HLPKIHILTDCMSPVPASPGSPDFPALAAQFASDMAARGLVLTTSDAFLA
CCCEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEECCCHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: nicotinamide; H2O

Specific reaction: nicotinamide + H2O = nicotinate + NH3

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA