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The map label for this gene is rarA [H]

Identifier: 86749444

GI number: 86749444

Start: 2673054

End: 2674388

Strand: Direct

Name: rarA [H]

Synonym: RPB_2324

Alternate gene names: 86749444

Gene position: 2673054-2674388 (Clockwise)

Preceding gene: 86749443

Following gene: 86749446

Centisome position: 50.14

GC content: 68.91

Gene sequence:

>1335_bases
ATGAGTCCCAAGCGCCCGACGCCATCGTCCAATCTGTTCGCTGCCGCCGGCCTCGAGCGTGAGGCGCCGCGGCCGTTGCC
GGATCGGCTGCGGCCGCGCGTGCTCGCCGACGTCGTCGGCCAGGACCACATCCTCGGCCCCGACGGCGCGCTGACGCGGA
TGCTGGCGACGCGGACGCTCGGCTCGCTGGTGTTCTGGGGCCCGCCCGGCACCGGCAAGACCACCGTCGCGCGGCTGCTG
GCCGACGCCACCGAGCTGCATTTCGAGCAGATCTCCGCGGTGTTCTCCGGCGTCGCCGATCTGAAAAAAGTGTTCGACGC
CGCCCGCGCGCGCCGCGAGATGGGCCGCGGCACGCTGCTGTTCGTCGACGAGGTACATCGCTTCAACAAGGCGCAGCAGG
ACTCGTTTCTGCCGGTGATGGAAGACGGCACCGTGGTGCTGGTCGGCGCGACGACGGAGAACCCGTCGTTCGAGCTCAAC
GCGGCGCTTCTCTCACGCGCGCGCGTGCTGGTGTTCCAGTCGCTCGATGCCGCGGCAATCGAGAAACTGTTCGCCCATGC
GGAAGCGGCCGAGGGCCGGAAGCTGCCGCTCGATGCCGAGGCGCGCGCGGTGCTGGTGCGGATGGCCGATGGCGACGGCC
GCGCCTCGCTGACGCTGGCCGAAGAGGTCTGGCGCTCGGCGCGCGACGGCGAGATCTTCAATGCCGCGCAGTTGCAGGAC
ATCCTGCAGCGTCGCGCGCCGATCTACGACAAATCCGCCGACGGCCACTACAACCTGATCTCGGCACTGCATAAATCGGT
GCGCGGCTCCGATCCGGACGCGGCGCTGTACTATCTGTGCCGGATGTTCGACGCCGGCGAGGACCCGCTGTTCCTGGCGC
GGCGCGTGGTGCGGATGGCGGTCGAGGACATCGGGCTGGCCGATCCGCAGGCGCTGGTGATCTGCAATGCCGCCAAGGAC
GCCTACGACTTCCTCGGCTCGCCCGAGGGCGAACTCGCGATCGCGCAGGCGGTGATCTATCTCGCCACCGCGCCGAAATC
CAACGCCGCCTACACCGCCTACAAGGCCGCGATGCGCGCGGCGAAGCAGGGCGGCTCGCTGCTGCCGCCCAAGCACATCC
TCAACGCCCCGACCGGGCTGATGAAGTCCGAAGGCTATGGCGGCGGCTACCAATACGACCACGACACGCCCGAGGGCTTC
TCCGGCCAGGAGTATTTCCCCGACGCGCTCGGCCACCAGACGTTTTACGATCCCCCCGACCGCGGCTTCGAACGCGAGAT
CCGCAAGCGGCTGGACTATTGGGCGAAGCTGCGCGCGGCGAAGGACAACTCGTAG

Upstream 100 bases:

>100_bases
AGCCGCTCGGCCTCGTGGAGACGCCCCCTCATCCCACCCTTCTCCCCGCACGCGGGGAGAAGGAGCAGGCGGTGCGTGGG
GAAAGGGAGCGGGCCAGACG

Downstream 100 bases:

>100_bases
GGTGGGTTAGGCGCTCTTGCGCCGTAACCCACCGTCCTCGCGCGGAGAGATGAGTCGGTGGGTTACGCGCTGCGCGCGAA
CCCACCCTACAGACTGAAGA

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 444; Mature: 443

Protein sequence:

>444_residues
MSPKRPTPSSNLFAAAGLEREAPRPLPDRLRPRVLADVVGQDHILGPDGALTRMLATRTLGSLVFWGPPGTGKTTVARLL
ADATELHFEQISAVFSGVADLKKVFDAARARREMGRGTLLFVDEVHRFNKAQQDSFLPVMEDGTVVLVGATTENPSFELN
AALLSRARVLVFQSLDAAAIEKLFAHAEAAEGRKLPLDAEARAVLVRMADGDGRASLTLAEEVWRSARDGEIFNAAQLQD
ILQRRAPIYDKSADGHYNLISALHKSVRGSDPDAALYYLCRMFDAGEDPLFLARRVVRMAVEDIGLADPQALVICNAAKD
AYDFLGSPEGELAIAQAVIYLATAPKSNAAYTAYKAAMRAAKQGGSLLPPKHILNAPTGLMKSEGYGGGYQYDHDTPEGF
SGQEYFPDALGHQTFYDPPDRGFEREIRKRLDYWAKLRAAKDNS

Sequences:

>Translated_444_residues
MSPKRPTPSSNLFAAAGLEREAPRPLPDRLRPRVLADVVGQDHILGPDGALTRMLATRTLGSLVFWGPPGTGKTTVARLL
ADATELHFEQISAVFSGVADLKKVFDAARARREMGRGTLLFVDEVHRFNKAQQDSFLPVMEDGTVVLVGATTENPSFELN
AALLSRARVLVFQSLDAAAIEKLFAHAEAAEGRKLPLDAEARAVLVRMADGDGRASLTLAEEVWRSARDGEIFNAAQLQD
ILQRRAPIYDKSADGHYNLISALHKSVRGSDPDAALYYLCRMFDAGEDPLFLARRVVRMAVEDIGLADPQALVICNAAKD
AYDFLGSPEGELAIAQAVIYLATAPKSNAAYTAYKAAMRAAKQGGSLLPPKHILNAPTGLMKSEGYGGGYQYDHDTPEGF
SGQEYFPDALGHQTFYDPPDRGFEREIRKRLDYWAKLRAAKDNS
>Mature_443_residues
SPKRPTPSSNLFAAAGLEREAPRPLPDRLRPRVLADVVGQDHILGPDGALTRMLATRTLGSLVFWGPPGTGKTTVARLLA
DATELHFEQISAVFSGVADLKKVFDAARARREMGRGTLLFVDEVHRFNKAQQDSFLPVMEDGTVVLVGATTENPSFELNA
ALLSRARVLVFQSLDAAAIEKLFAHAEAAEGRKLPLDAEARAVLVRMADGDGRASLTLAEEVWRSARDGEIFNAAQLQDI
LQRRAPIYDKSADGHYNLISALHKSVRGSDPDAALYYLCRMFDAGEDPLFLARRVVRMAVEDIGLADPQALVICNAAKDA
YDFLGSPEGELAIAQAVIYLATAPKSNAAYTAYKAAMRAAKQGGSLLPPKHILNAPTGLMKSEGYGGGYQYDHDTPEGFS
GQEYFPDALGHQTFYDPPDRGFEREIRKRLDYWAKLRAAKDNS

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=439, Percent_Identity=42.1412300683371, Blast_Score=313, Evalue=1e-85,
Organism=Homo sapiens, GI18426904, Length=439, Percent_Identity=38.2687927107062, Blast_Score=261, Evalue=1e-69,
Organism=Escherichia coli, GI1787119, Length=425, Percent_Identity=46.1176470588235, Blast_Score=363, Evalue=1e-102,
Organism=Saccharomyces cerevisiae, GI6324111, Length=433, Percent_Identity=39.2609699769053, Blast_Score=296, Evalue=4e-81,
Organism=Saccharomyces cerevisiae, GI6324039, Length=219, Percent_Identity=27.8538812785388, Blast_Score=70, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 48399; Mature: 48268

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPKRPTPSSNLFAAAGLEREAPRPLPDRLRPRVLADVVGQDHILGPDGALTRMLATRTL
CCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHH
GSLVFWGPPGTGKTTVARLLADATELHFEQISAVFSGVADLKKVFDAARARREMGRGTLL
CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
FVDEVHRFNKAQQDSFLPVMEDGTVVLVGATTENPSFELNAALLSRARVLVFQSLDAAAI
EHHHHHHHCHHCCCCCCEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCHHHH
EKLFAHAEAAEGRKLPLDAEARAVLVRMADGDGRASLTLAEEVWRSARDGEIFNAAQLQD
HHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCEEEHHHHHHHHCCCCCCCCCHHHHHH
ILQRRAPIYDKSADGHYNLISALHKSVRGSDPDAALYYLCRMFDAGEDPLFLARRVVRMA
HHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
VEDIGLADPQALVICNAAKDAYDFLGSPEGELAIAQAVIYLATAPKSNAAYTAYKAAMRA
HHHCCCCCCCEEEEECCCHHHHHHCCCCCCHHHHHHHHHHHEECCCCCCHHHHHHHHHHH
AKQGGSLLPPKHILNAPTGLMKSEGYGGGYQYDHDTPEGFSGQEYFPDALGHQTFYDPPD
HHCCCCCCCCHHHHCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCC
RGFEREIRKRLDYWAKLRAAKDNS
CCHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SPKRPTPSSNLFAAAGLEREAPRPLPDRLRPRVLADVVGQDHILGPDGALTRMLATRTL
CCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHH
GSLVFWGPPGTGKTTVARLLADATELHFEQISAVFSGVADLKKVFDAARARREMGRGTLL
CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
FVDEVHRFNKAQQDSFLPVMEDGTVVLVGATTENPSFELNAALLSRARVLVFQSLDAAAI
EHHHHHHHCHHCCCCCCEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCHHHH
EKLFAHAEAAEGRKLPLDAEARAVLVRMADGDGRASLTLAEEVWRSARDGEIFNAAQLQD
HHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCEEEHHHHHHHHCCCCCCCCCHHHHHH
ILQRRAPIYDKSADGHYNLISALHKSVRGSDPDAALYYLCRMFDAGEDPLFLARRVVRMA
HHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
VEDIGLADPQALVICNAAKDAYDFLGSPEGELAIAQAVIYLATAPKSNAAYTAYKAAMRA
HHHCCCCCCCEEEEECCCHHHHHHCCCCCCHHHHHHHHHHHEECCCCCCHHHHHHHHHHH
AKQGGSLLPPKHILNAPTGLMKSEGYGGGYQYDHDTPEGFSGQEYFPDALGHQTFYDPPD
HHCCCCCCCCHHHHCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCC
RGFEREIRKRLDYWAKLRAAKDNS
CCHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]