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The map label for this gene is fecI [C]

Identifier: 86749352

GI number: 86749352

Start: 2544126

End: 2544671

Strand: Direct

Name: fecI [C]

Synonym: RPB_2232

Alternate gene names: 86749352

Gene position: 2544126-2544671 (Clockwise)

Preceding gene: 86749351

Following gene: 86749353

Centisome position: 47.72

GC content: 64.47

Gene sequence:

>546_bases
ATGAGCGTTGTTTCGAAGCTTCGTCTGCGGGCACTTCTCGAGGCCAATTATCAGCAGTTTCGCCTGCGGTTGCGGCGCCG
GCTCGGCTCGGACGCGATGGCGATGGAAGTGCTGCACGACACCTGGCTGCGGCTCGACCGCATCGGCGACGCCAGTGCGG
TGCAGAAGCCCGCGGCCTACCTGTTCCGTATGGCCCTGAACGAGGCCAGCGACCGGCGCGAAGCGGATGCGCGCAAGCTA
TCGGCGGCCGAGATCGAAACGTTGCGTCATATGTCGGACCAGATGCTGGATCCCGAGCAGATTGCGCAGGCGCGTCGGGA
GGTCACGCAGCTCGCGGCGGCCCTCGACGAACTGCCGCCGCGGCGCAAGGCCATCGTTCTGCTCGCACGCGTGCACGAGA
TGAAACACACCGACATTGCGGTTCATTTCGGGATCTCGCCGCGCATGGTGGAGAAGGAGCTCGTCCAGGCCTTGGAGCAT
TGCGCGCGACGTCTCGAAAGAAAAGTCGTCCGTCGGTTCGGTCCTCGCTCGCAGAAGCCGTCATAG

Upstream 100 bases:

>100_bases
CGATCGCCACGGTCAGGGCGCCGCCGCCGCCGATCGGATTGCCGCAGCCGGTGACGCTGCTGCTGCAGCATATCACCGAA
GACGTGACGACCTGCCCGCC

Downstream 100 bases:

>100_bases
TGTCCGGCTCGCGATCAGATATGGAAGAGGACGGCAATCCGGTGGCAGATGCGGCGGGGTATCCGACGTTGCGGTTCGAA
GCGCGGCGCTGGCTGGTTCG

Product: sigma-24 (FecI-like)

Products: NA

Alternate protein names: Sigma-; ECF Subfamily RNA Polymerase Sigma Factor; RNA Polymerase ECF-Type Sigma Factor FecI; RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor FecI Family; RNA Polymerase Sigma Factor FecI; Extracytoplasmic Function Sigma Factor Protein; Sigma-70 Family RNA Polymerase Sigma Factor; FecI-Like Protein; RNA Polymerase ECF-Subfamily Sigma-70 Factor; ECF-Type RNA Polymerase Sigma Factor

Number of amino acids: Translated: 181; Mature: 180

Protein sequence:

>181_residues
MSVVSKLRLRALLEANYQQFRLRLRRRLGSDAMAMEVLHDTWLRLDRIGDASAVQKPAAYLFRMALNEASDRREADARKL
SAAEIETLRHMSDQMLDPEQIAQARREVTQLAAALDELPPRRKAIVLLARVHEMKHTDIAVHFGISPRMVEKELVQALEH
CARRLERKVVRRFGPRSQKPS

Sequences:

>Translated_181_residues
MSVVSKLRLRALLEANYQQFRLRLRRRLGSDAMAMEVLHDTWLRLDRIGDASAVQKPAAYLFRMALNEASDRREADARKL
SAAEIETLRHMSDQMLDPEQIAQARREVTQLAAALDELPPRRKAIVLLARVHEMKHTDIAVHFGISPRMVEKELVQALEH
CARRLERKVVRRFGPRSQKPS
>Mature_180_residues
SVVSKLRLRALLEANYQQFRLRLRRRLGSDAMAMEVLHDTWLRLDRIGDASAVQKPAAYLFRMALNEASDRREADARKLS
AAEIETLRHMSDQMLDPEQIAQARREVTQLAAALDELPPRRKAIVLLARVHEMKHTDIAVHFGISPRMVEKELVQALEHC
ARRLERKVVRRFGPRSQKPS

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20882; Mature: 20750

Theoretical pI: Translated: 11.08; Mature: 11.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVVSKLRLRALLEANYQQFRLRLRRRLGSDAMAMEVLHDTWLRLDRIGDASAVQKPAAY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
LFRMALNEASDRREADARKLSAAEIETLRHMSDQMLDPEQIAQARREVTQLAAALDELPP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
RRKAIVLLARVHEMKHTDIAVHFGISPRMVEKELVQALEHCARRLERKVVRRFGPRSQKP
HHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
S
C
>Mature Secondary Structure 
SVVSKLRLRALLEANYQQFRLRLRRRLGSDAMAMEVLHDTWLRLDRIGDASAVQKPAAY
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
LFRMALNEASDRREADARKLSAAEIETLRHMSDQMLDPEQIAQARREVTQLAAALDELPP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
RRKAIVLLARVHEMKHTDIAVHFGISPRMVEKELVQALEHCARRLERKVVRRFGPRSQKP
HHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
S
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA