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The map label for this gene is fecI [C]

Identifier: 86749337

GI number: 86749337

Start: 2529965

End: 2530516

Strand: Direct

Name: fecI [C]

Synonym: RPB_2217

Alternate gene names: 86749337

Gene position: 2529965-2530516 (Clockwise)

Preceding gene: 86749336

Following gene: 86749338

Centisome position: 47.45

GC content: 58.7

Gene sequence:

>552_bases
GTGTTCGATCGCAACAGTAAATCGCTCCGTGAGGCACTGGCGGCAGACTATCAGGGACTTGCGAAACGGCTGACCCGCTG
TTTGGGCTCTGCCGACGTCGCCCACGAAACGCTGCATGAGACCTTCCTCAAGGTAGATCGGGTCTCGGACGCCGTGGAAA
TCCGCAGTCCGGTGGATTATCTGTTTCGCATCGCCCTCAATGTTGCCAAAGATCGCAACAAGAAGGATCGGCATCTGCTG
AGCGCCGGTGAGGTCGCCGCGATCATGGACGTTGTCGATGATCGGCCCGATCCGGCGATTGTGGCTGAATCTCGCATGGA
GATCGCCGAGTTCCAGAAAGCGCTCGGCGAATTGCCGCAGCGTCGGCGTGAGGTTTTCATCGCTGCTCATCTCGAGCAGA
TCCCGCATCGTGATATTGCCCAACGTTTCGGAATCAATATTCGGACTGTCGAATTCGACATTCAGCACGCCATGGAGTAT
TTGAGCCGCCGACTAGGCCGCCGGGTGGTTCGTCGCTACGGTCCCCGCCCGAAACCGCGAGCGGTCGACTAG

Upstream 100 bases:

>100_bases
CTACAAACAACCGTCACGAGGTTGTCACTGACCGCCGATACCTACCGATGCGGTCATTCATGGCAGTTTGTAAGCACGTC
AGTGCGGGCAGCGTAAAAAA

Downstream 100 bases:

>100_bases
CCGCAGATCGCTTGGATCCGGGCGTTTCTGCCGGGCGGAATTTACCGCCGGCAGCCTGAAAGCAGGTCACGTCGCTTGAA
CTTACTTACGAGAACCGAAG

Product: sigma-24 (FecI-like)

Products: NA

Alternate protein names: Sigma-; ECF Subfamily RNA Polymerase Sigma Factor; RNA Polymerase ECF-Type Sigma Factor FecI; RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase ECF-Subfamily Sigma-70 Factor; ECF-Type RNA Polymerase Sigma Factor

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MFDRNSKSLREALAADYQGLAKRLTRCLGSADVAHETLHETFLKVDRVSDAVEIRSPVDYLFRIALNVAKDRNKKDRHLL
SAGEVAAIMDVVDDRPDPAIVAESRMEIAEFQKALGELPQRRREVFIAAHLEQIPHRDIAQRFGINIRTVEFDIQHAMEY
LSRRLGRRVVRRYGPRPKPRAVD

Sequences:

>Translated_183_residues
MFDRNSKSLREALAADYQGLAKRLTRCLGSADVAHETLHETFLKVDRVSDAVEIRSPVDYLFRIALNVAKDRNKKDRHLL
SAGEVAAIMDVVDDRPDPAIVAESRMEIAEFQKALGELPQRRREVFIAAHLEQIPHRDIAQRFGINIRTVEFDIQHAMEY
LSRRLGRRVVRRYGPRPKPRAVD
>Mature_183_residues
MFDRNSKSLREALAADYQGLAKRLTRCLGSADVAHETLHETFLKVDRVSDAVEIRSPVDYLFRIALNVAKDRNKKDRHLL
SAGEVAAIMDVVDDRPDPAIVAESRMEIAEFQKALGELPQRRREVFIAAHLEQIPHRDIAQRFGINIRTVEFDIQHAMEY
LSRRLGRRVVRRYGPRPKPRAVD

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21024; Mature: 21024

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDRNSKSLREALAADYQGLAKRLTRCLGSADVAHETLHETFLKVDRVSDAVEIRSPVDY
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFRIALNVAKDRNKKDRHLLSAGEVAAIMDVVDDRPDPAIVAESRMEIAEFQKALGELPQ
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
RRREVFIAAHLEQIPHRDIAQRFGINIRTVEFDIQHAMEYLSRRLGRRVVRRYGPRPKPR
HHHHHHHHHHHHHCCCHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
AVD
CCC
>Mature Secondary Structure
MFDRNSKSLREALAADYQGLAKRLTRCLGSADVAHETLHETFLKVDRVSDAVEIRSPVDY
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFRIALNVAKDRNKKDRHLLSAGEVAAIMDVVDDRPDPAIVAESRMEIAEFQKALGELPQ
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
RRREVFIAAHLEQIPHRDIAQRFGINIRTVEFDIQHAMEYLSRRLGRRVVRRYGPRPKPR
HHHHHHHHHHHHHCCCHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
AVD
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA