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The map label for this gene is fecI [C]

Identifier: 86749332

GI number: 86749332

Start: 2514203

End: 2514811

Strand: Direct

Name: fecI [C]

Synonym: RPB_2212

Alternate gene names: 86749332

Gene position: 2514203-2514811 (Clockwise)

Preceding gene: 86749331

Following gene: 86749333

Centisome position: 47.16

GC content: 64.04

Gene sequence:

>609_bases
ATGACGGAGGCGGGTTGGGCAGCGCTGCAGCAACGCCTGCTGCTGCGCTACGACGATTTCAAACGGCGCCTGACACGCTA
TCTCGGGTCGTCCGAACTGGCTGGCGACGCATTGCACGATACCTGGCTGCGCTTGCAGCGCGGCGGCCAGATCGATGCTG
TGCGCAGTCCTGACACCTATCTGCTACGCATCGCAATCAATATGGGCCGCGATCATCTGCGTGCCGAAAACCGTCTGGTG
TCCACATCCGATGCTGCGACCTTGCTCGGCATCTCCGACGACGCGCCGGACGCCGAACGCGACGCCGAGGGACGCTCGGA
ATTGCGGCTGCTCACCGCCATCATGGCCGAACTCCCGCCACGGCAGAAGGCGATCCTGATCGCCGCCCGTGTCGAAGGTC
TGCCGCGCGGCGAGATCGCGCGGCGTTACGGCGTTTCCGTGCGCTACGTGCATCGTGAGTTGCAGGCCGCTCACGATTAT
TGCGCCGAGCGTCTCGAAAAAATGACGGCGGACCTGTACCGATTGGCGCCGCGAGAAACGTCTCTTCCAGAGAGACTTTC
ATCACCGCTCCCGGGCGGGCCGCACATCCTGGCTGCGCGCGATGATTAG

Upstream 100 bases:

>100_bases
CGCCGCCCGCCGGCTTCGCTCAGCCGGTCATCATGACGGTGTTGCCGGATATGCAGAATGATTGCCGGACGCTTCAGCGG
CAGCGGCAGCGGGTCGAGCG

Downstream 100 bases:

>100_bases
ATCCGACGGGGGCGAAAGAACCGAATTGAGAACCGACGCACGCCGGCTGATCACGCATCTGCTCTCCGGAGAAGCCAAAC
GCTCGGATTTCGATGCCGCT

Product: sigma-24 (FecI-like)

Products: NA

Alternate protein names: Sigma-; ECF Subfamily RNA Polymerase Sigma Factor; RNA Polymerase ECF-Type Sigma Factor FecI; ECF Subfamily RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Family RNA Polymerase Sigma Factor; Sigma-70 Family RNA Polymerase Sigma Factor; FecI-Like Protein; RNA Polymerase Sigma Factor FecI; PpiC-Type Peptidyl-Prolyl Cis-Trans Isomerase; Anti-FecI Sigma Factor FecR; RNA Polymerase ECF-Subfamily Sigma-70 Factor; RNA Polymerase Sigma Factor FecI Family; ECF-Type RNA Polymerase Sigma Factor

Number of amino acids: Translated: 202; Mature: 201

Protein sequence:

>202_residues
MTEAGWAALQQRLLLRYDDFKRRLTRYLGSSELAGDALHDTWLRLQRGGQIDAVRSPDTYLLRIAINMGRDHLRAENRLV
STSDAATLLGISDDAPDAERDAEGRSELRLLTAIMAELPPRQKAILIAARVEGLPRGEIARRYGVSVRYVHRELQAAHDY
CAERLEKMTADLYRLAPRETSLPERLSSPLPGGPHILAARDD

Sequences:

>Translated_202_residues
MTEAGWAALQQRLLLRYDDFKRRLTRYLGSSELAGDALHDTWLRLQRGGQIDAVRSPDTYLLRIAINMGRDHLRAENRLV
STSDAATLLGISDDAPDAERDAEGRSELRLLTAIMAELPPRQKAILIAARVEGLPRGEIARRYGVSVRYVHRELQAAHDY
CAERLEKMTADLYRLAPRETSLPERLSSPLPGGPHILAARDD
>Mature_201_residues
TEAGWAALQQRLLLRYDDFKRRLTRYLGSSELAGDALHDTWLRLQRGGQIDAVRSPDTYLLRIAINMGRDHLRAENRLVS
TSDAATLLGISDDAPDAERDAEGRSELRLLTAIMAELPPRQKAILIAARVEGLPRGEIARRYGVSVRYVHRELQAAHDYC
AERLEKMTADLYRLAPRETSLPERLSSPLPGGPHILAARDD

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22678; Mature: 22547

Theoretical pI: Translated: 7.72; Mature: 7.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEAGWAALQQRLLLRYDDFKRRLTRYLGSSELAGDALHDTWLRLQRGGQIDAVRSPDTY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHCCCCCCEECCCCEE
LLRIAINMGRDHLRAENRLVSTSDAATLLGISDDAPDAERDAEGRSELRLLTAIMAELPP
EEEEEEHHCHHHHHHHCCEECCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
RQKAILIAARVEGLPRGEIARRYGVSVRYVHRELQAAHDYCAERLEKMTADLYRLAPRET
CHHEEEEEEHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SLPERLSSPLPGGPHILAARDD
CCHHHHCCCCCCCCEEEEECCC
>Mature Secondary Structure 
TEAGWAALQQRLLLRYDDFKRRLTRYLGSSELAGDALHDTWLRLQRGGQIDAVRSPDTY
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHCCCCCCEECCCCEE
LLRIAINMGRDHLRAENRLVSTSDAATLLGISDDAPDAERDAEGRSELRLLTAIMAELPP
EEEEEEHHCHHHHHHHCCEECCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
RQKAILIAARVEGLPRGEIARRYGVSVRYVHRELQAAHDYCAERLEKMTADLYRLAPRET
CHHEEEEEEHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SLPERLSSPLPGGPHILAARDD
CCHHHHCCCCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA