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The map label for this gene is ycjO [C]

Identifier: 86749219

GI number: 86749219

Start: 2385365

End: 2386318

Strand: Direct

Name: ycjO [C]

Synonym: RPB_2098

Alternate gene names: 86749219

Gene position: 2385365-2386318 (Clockwise)

Preceding gene: 86749218

Following gene: 86749220

Centisome position: 44.74

GC content: 63.73

Gene sequence:

>954_bases
ATGACCAGCATCCAGACATCGGTGCCGGCGCGGTCGCAGGGGAGCGCGTCCGCGTGGCAGCGGCTCTCGACCAACCGCAA
CTGGCTGGCGCTGTGGTTCATGATGCCGGCGGCGGCGTTCCTGATCCTGTTCCTGGCCTATCCGTTGTTCCTCGGCGTCT
GGATGAGCTTCACCGACGCGCGGATCGGCCGCGACGGCGTCTATGTCGGCGTCGAGAACTACGAATGGCTGTGGGACGAT
TCGATCTTCTGGCTGTCGGTGTTCAACACCATCCTCTACACGACGGTCGCCAGCGCCATCAAATTCGCCGTCGGGCTGTA
TCTGGCGCTGCTGCTCAACCGGCACATGCCGTTCAAGGCGATGATCCGCGCCGCGGTGCTGGTGCCGTTCATCGTGCCGA
CCGTGCTGTCGGCGATCGCGTTCTGGTGGATCTACGATTCGCAGTTCTCGATCATCTCCTGGTCGCTGATCAAGCTCGGC
CTGATCGACCAGAACATCAATTTCCTCGGCGACCCCAATTGGGCGCGCGCATCCGTGATCTTCGCCAATATCTGGCGCGG
CGTGCCGTTCGTGGCGATCACGCTGCTGGCAGGTCTGCAGACGGTGTCGCCGTCGCTGTACGAGGCGGCGACACTCGACG
GCGCCACCGCGTGGCAGCGCTTTCGCTACATCACCTATCCGCTGCTGACGCCGATCATCGCCGTGGTGATGACGTTCTCG
GTGCTGTTCACCTTCACGGATTTCCAGTTGATCTGGGCGCTGACCCGCGGCGGGCCGGTCAACGCCACGCATCTGATGGC
GACGCTGAGCTATCAGCGCGGCATTCTCTCCGGCCGGCTCGGCGAGGGCGCGGCGATCGCCACCGCGATGATCCCGTTCC
TGCTGGCGGCGATTTCGATCTCCTGGTTCGGCATGCAGCGCCGCAAGTGGCAGCAAGGAACCGACAATGATTGA

Upstream 100 bases:

>100_bases
TCAGTACGTGGATGCCCGGGACGAGCCCGGGTATGACCAAGAGCAACAACGGGTCGGTGATGATGAACCAGCCTAGTCCG
CCACCAGAAAGAACCCCGCG

Downstream 100 bases:

>100_bases
GGCGCGCCATGACTGAAACCACCGCCTCCGACCCGCGCCTCGCGGTCAAGGCCGCGACCGTCGCCCGGGACGACGACAGC
GAGGGCATGAGCTATCTGGA

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 316

Protein sequence:

>317_residues
MTSIQTSVPARSQGSASAWQRLSTNRNWLALWFMMPAAAFLILFLAYPLFLGVWMSFTDARIGRDGVYVGVENYEWLWDD
SIFWLSVFNTILYTTVASAIKFAVGLYLALLLNRHMPFKAMIRAAVLVPFIVPTVLSAIAFWWIYDSQFSIISWSLIKLG
LIDQNINFLGDPNWARASVIFANIWRGVPFVAITLLAGLQTVSPSLYEAATLDGATAWQRFRYITYPLLTPIIAVVMTFS
VLFTFTDFQLIWALTRGGPVNATHLMATLSYQRGILSGRLGEGAAIATAMIPFLLAAISISWFGMQRRKWQQGTDND

Sequences:

>Translated_317_residues
MTSIQTSVPARSQGSASAWQRLSTNRNWLALWFMMPAAAFLILFLAYPLFLGVWMSFTDARIGRDGVYVGVENYEWLWDD
SIFWLSVFNTILYTTVASAIKFAVGLYLALLLNRHMPFKAMIRAAVLVPFIVPTVLSAIAFWWIYDSQFSIISWSLIKLG
LIDQNINFLGDPNWARASVIFANIWRGVPFVAITLLAGLQTVSPSLYEAATLDGATAWQRFRYITYPLLTPIIAVVMTFS
VLFTFTDFQLIWALTRGGPVNATHLMATLSYQRGILSGRLGEGAAIATAMIPFLLAAISISWFGMQRRKWQQGTDND
>Mature_316_residues
TSIQTSVPARSQGSASAWQRLSTNRNWLALWFMMPAAAFLILFLAYPLFLGVWMSFTDARIGRDGVYVGVENYEWLWDDS
IFWLSVFNTILYTTVASAIKFAVGLYLALLLNRHMPFKAMIRAAVLVPFIVPTVLSAIAFWWIYDSQFSIISWSLIKLGL
IDQNINFLGDPNWARASVIFANIWRGVPFVAITLLAGLQTVSPSLYEAATLDGATAWQRFRYITYPLLTPIIAVVMTFSV
LFTFTDFQLIWALTRGGPVNATHLMATLSYQRGILSGRLGEGAAIATAMIPFLLAAISISWFGMQRRKWQQGTDND

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=260, Percent_Identity=29.2307692307692, Blast_Score=117, Evalue=7e-28,
Organism=Escherichia coli, GI1790465, Length=234, Percent_Identity=30.7692307692308, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1789861, Length=285, Percent_Identity=25.6140350877193, Blast_Score=85, Evalue=6e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35582; Mature: 35451

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSIQTSVPARSQGSASAWQRLSTNRNWLALWFMMPAAAFLILFLAYPLFLGVWMSFTDA
CCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RIGRDGVYVGVENYEWLWDDSIFWLSVFNTILYTTVASAIKFAVGLYLALLLNRHMPFKA
HCCCCCEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
MIRAAVLVPFIVPTVLSAIAFWWIYDSQFSIISWSLIKLGLIDQNINFLGDPNWARASVI
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
FANIWRGVPFVAITLLAGLQTVSPSLYEAATLDGATAWQRFRYITYPLLTPIIAVVMTFS
HHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VLFTFTDFQLIWALTRGGPVNATHLMATLSYQRGILSGRLGEGAAIATAMIPFLLAAISI
HHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
SWFGMQRRKWQQGTDND
HHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TSIQTSVPARSQGSASAWQRLSTNRNWLALWFMMPAAAFLILFLAYPLFLGVWMSFTDA
CCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RIGRDGVYVGVENYEWLWDDSIFWLSVFNTILYTTVASAIKFAVGLYLALLLNRHMPFKA
HCCCCCEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
MIRAAVLVPFIVPTVLSAIAFWWIYDSQFSIISWSLIKLGLIDQNINFLGDPNWARASVI
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
FANIWRGVPFVAITLLAGLQTVSPSLYEAATLDGATAWQRFRYITYPLLTPIIAVVMTFS
HHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VLFTFTDFQLIWALTRGGPVNATHLMATLSYQRGILSGRLGEGAAIATAMIPFLLAAISI
HHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
SWFGMQRRKWQQGTDND
HHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]