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The map label for this gene is exbD [H]

Identifier: 86749212

GI number: 86749212

Start: 2377281

End: 2377730

Strand: Direct

Name: exbD [H]

Synonym: RPB_2091

Alternate gene names: 86749212

Gene position: 2377281-2377730 (Clockwise)

Preceding gene: 86749211

Following gene: 86749213

Centisome position: 44.59

GC content: 64.22

Gene sequence:

>450_bases
ATGGCGGTCTCGCTCAACGATTCCGACGGCCTCGACGACGATTTCGACGAGACCCACGAGATCAACGTCACGCCGTTCAT
CGACGTGATGCTGGTGCTGCTGATCATCTTCATGGTCGCGGCGCCGCTGTCGACGGTGGATCTGCCGGTCAGCCTGCCGA
CCTCGACCGCGACGCCGCAGAAGCGCCCGGACAAGCCGACCTATGTCAGCATCAAGCCGGATCTGGCGGTGGCGATCGGC
GAGGAGCAGGTCAAGCGCGTCGATCTGGTGCGGACGCTGGATGCGATGCCGGATATGACCAAGGACCGCTTCATCTTCCT
GCGCGCCGACCGTGCTGTGCCGTATGGCGAACTGATGGACGTGCTGGAAATGCTGCGCACCGGCGGCTACGCCAAGATCA
AGCTGGTGGCGCTGGAAGGCGTGCCAGGGCGAACTCCGGAGGCGCAGTAG

Upstream 100 bases:

>100_bases
AATGGTGGCGCGGGCGTCGGGCGCGGCGTTGCGGCTGTTGTCGCGCGATCTCGATCGCAGCCACGGCACCGGCCGGCACG
CGCGCGCGGCGGAGTAGGCG

Downstream 100 bases:

>100_bases
CGCATGACCGAGTACGATTTCTCCCACCAGTCCTCGCGCACGCTCTGGCTGATCGCCGGCGTCGCCGCGGTCGCGCTGCA
TGTCGGCGGCGTCGCGCTGG

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 148

Protein sequence:

>149_residues
MAVSLNDSDGLDDDFDETHEINVTPFIDVMLVLLIIFMVAAPLSTVDLPVSLPTSTATPQKRPDKPTYVSIKPDLAVAIG
EEQVKRVDLVRTLDAMPDMTKDRFIFLRADRAVPYGELMDVLEMLRTGGYAKIKLVALEGVPGRTPEAQ

Sequences:

>Translated_149_residues
MAVSLNDSDGLDDDFDETHEINVTPFIDVMLVLLIIFMVAAPLSTVDLPVSLPTSTATPQKRPDKPTYVSIKPDLAVAIG
EEQVKRVDLVRTLDAMPDMTKDRFIFLRADRAVPYGELMDVLEMLRTGGYAKIKLVALEGVPGRTPEAQ
>Mature_148_residues
AVSLNDSDGLDDDFDETHEINVTPFIDVMLVLLIIFMVAAPLSTVDLPVSLPTSTATPQKRPDKPTYVSIKPDLAVAIGE
EQVKRVDLVRTLDAMPDMTKDRFIFLRADRAVPYGELMDVLEMLRTGGYAKIKLVALEGVPGRTPEAQ

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=144, Percent_Identity=52.7777777777778, Blast_Score=141, Evalue=2e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400
- InterPro:   IPR014170 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 16400; Mature: 16269

Theoretical pI: Translated: 4.28; Mature: 4.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVSLNDSDGLDDDFDETHEINVTPFIDVMLVLLIIFMVAAPLSTVDLPVSLPTSTATPQ
CEEECCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCC
KRPDKPTYVSIKPDLAVAIGEEQVKRVDLVRTLDAMPDMTKDRFIFLRADRAVPYGELMD
CCCCCCCEEEECCCEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHH
VLEMLRTGGYAKIKLVALEGVPGRTPEAQ
HHHHHHCCCCEEEEEEEEECCCCCCCCCC
>Mature Secondary Structure 
AVSLNDSDGLDDDFDETHEINVTPFIDVMLVLLIIFMVAAPLSTVDLPVSLPTSTATPQ
EEECCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCC
KRPDKPTYVSIKPDLAVAIGEEQVKRVDLVRTLDAMPDMTKDRFIFLRADRAVPYGELMD
CCCCCCCEEEECCCEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHH
VLEMLRTGGYAKIKLVALEGVPGRTPEAQ
HHHHHHCCCCEEEEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]