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The map label for this gene is erfK [H]

Identifier: 86748964

GI number: 86748964

Start: 2107453

End: 2108244

Strand: Direct

Name: erfK [H]

Synonym: RPB_1841

Alternate gene names: 86748964

Gene position: 2107453-2108244 (Clockwise)

Preceding gene: 86748962

Following gene: 86748971

Centisome position: 39.53

GC content: 67.68

Gene sequence:

>792_bases
ATGTTCAGGAAAACCACCCTCGCTTTGCTGACAAGTGTGTCCTGTGTTGCCGCCGGACTGCCGCAGGCGGCGGCCTACGA
GACCCCGCCCGCCCCCGAGCCCGCGGTGATCTACGGAGCCCGCCAGGCGCCGCAGCCCGTGCCGGTCCGCACCGTTTCGG
CCCAGCGCTCCAACATGGGCGGCGGCTTCATCGAGTTCCTGTTCAGCGACGGCGGCGAGCGGCCCAACTCGGGTTACTAC
GAGCAGCCGTCCGACGATCAGCAGCGGCGCTATCTGCCGCCGATGGATCCGCAGGCGCCGATGCAGATGCGCCAGCAGGA
GGCGATCGATCCGGCGCGGCCGGCGTTCGATCCGCGTTACGAAAAGCAGATCGTCGATTACCAGGGCAACGAGAAGCCGG
GTACCATCGTGGTCGATACGCCGAACAAGTTTCTCTATCTGGTGCAGGGCGACGGCCGCGCGCTGCGCTACGGCATCGGC
GTCGGCCGGCCGGGCTTCACCTGGTCGGGCGTCAAGACCATCTCCGCCAAGCGCGAGTGGCCGTCCTGGACGCCGCCGAA
GGAAATGCTGGCACGGCGCCCCGACCTGCCGCGCTTCATGGAGGGCGGCCCCGAGAATCCGCTCGGCGCCCGCGCGATGT
ATCTTGGCTCGTCGCTGTATCGCATCCACGGCTCCAACGAGCCGTGGACGATCGGCACCAACGTCTCGTCCGGCTGCATC
CGGATGCGCAACGAGGACGTCATCGACCTCTACGGTCGCGTCAATGTCGGCGCGCGGGTGGTGGTGATCTGA

Upstream 100 bases:

>100_bases
GCGTCGGCGTTTACCAAACCGATCCGGTTTTGGTTTCTGATCCGTTGCGTTCACCGGCGCCTTCGGGCGCGTCCCCGACG
AAACAGTTCAGAGTACGTCG

Downstream 100 bases:

>100_bases
GCCGCTGCGCCACTCACGACAACGGCCGCCCGTGGGCGGCCGTTTCAGGTCGGGCTGTGGCGAACCCGGGCGGCTCAGGC
GAAGTCGCTGTCGCCGCCGC

Product: ErfK/YbiS/YcfS/YnhG

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MFRKTTLALLTSVSCVAAGLPQAAAYETPPAPEPAVIYGARQAPQPVPVRTVSAQRSNMGGGFIEFLFSDGGERPNSGYY
EQPSDDQQRRYLPPMDPQAPMQMRQQEAIDPARPAFDPRYEKQIVDYQGNEKPGTIVVDTPNKFLYLVQGDGRALRYGIG
VGRPGFTWSGVKTISAKREWPSWTPPKEMLARRPDLPRFMEGGPENPLGARAMYLGSSLYRIHGSNEPWTIGTNVSSGCI
RMRNEDVIDLYGRVNVGARVVVI

Sequences:

>Translated_263_residues
MFRKTTLALLTSVSCVAAGLPQAAAYETPPAPEPAVIYGARQAPQPVPVRTVSAQRSNMGGGFIEFLFSDGGERPNSGYY
EQPSDDQQRRYLPPMDPQAPMQMRQQEAIDPARPAFDPRYEKQIVDYQGNEKPGTIVVDTPNKFLYLVQGDGRALRYGIG
VGRPGFTWSGVKTISAKREWPSWTPPKEMLARRPDLPRFMEGGPENPLGARAMYLGSSLYRIHGSNEPWTIGTNVSSGCI
RMRNEDVIDLYGRVNVGARVVVI
>Mature_263_residues
MFRKTTLALLTSVSCVAAGLPQAAAYETPPAPEPAVIYGARQAPQPVPVRTVSAQRSNMGGGFIEFLFSDGGERPNSGYY
EQPSDDQQRRYLPPMDPQAPMQMRQQEAIDPARPAFDPRYEKQIVDYQGNEKPGTIVVDTPNKFLYLVQGDGRALRYGIG
VGRPGFTWSGVKTISAKREWPSWTPPKEMLARRPDLPRFMEGGPENPLGARAMYLGSSLYRIHGSNEPWTIGTNVSSGCI
RMRNEDVIDLYGRVNVGARVVVI

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp, also known as the Braun lipoprotein) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1788299, Length=167, Percent_Identity=37.7245508982036, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1787040, Length=138, Percent_Identity=35.5072463768116, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1787356, Length=141, Percent_Identity=34.0425531914894, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1787968, Length=137, Percent_Identity=36.4963503649635, Blast_Score=71, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 29075; Mature: 29075

Theoretical pI: Translated: 9.20; Mature: 9.20

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRKTTLALLTSVSCVAAGLPQAAAYETPPAPEPAVIYGARQAPQPVPVRTVSAQRSNMG
CCCHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCEEEEECCCCCCCCCEEEECCCCCCCC
GGFIEFLFSDGGERPNSGYYEQPSDDQQRRYLPPMDPQAPMQMRQQEAIDPARPAFDPRY
CCEEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHH
EKQIVDYQGNEKPGTIVVDTPNKFLYLVQGDGRALRYGIGVGRPGFTWSGVKTISAKREW
HHHHHCCCCCCCCCEEEEECCCEEEEEEECCCCEEEEECCCCCCCCCCCCEEEEECCCCC
PSWTPPKEMLARRPDLPRFMEGGPENPLGARAMYLGSSLYRIHGSNEPWTIGTNVSSGCI
CCCCCHHHHHHCCCCCCHHHHCCCCCCCCCHHHHHCCEEEEEECCCCCEEEECCCCCCEE
RMRNEDVIDLYGRVNVGARVVVI
EECCCCEEEEEEEECCCEEEEEC
>Mature Secondary Structure
MFRKTTLALLTSVSCVAAGLPQAAAYETPPAPEPAVIYGARQAPQPVPVRTVSAQRSNMG
CCCHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCEEEEECCCCCCCCCEEEECCCCCCCC
GGFIEFLFSDGGERPNSGYYEQPSDDQQRRYLPPMDPQAPMQMRQQEAIDPARPAFDPRY
CCEEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHH
EKQIVDYQGNEKPGTIVVDTPNKFLYLVQGDGRALRYGIGVGRPGFTWSGVKTISAKREW
HHHHHCCCCCCCCCEEEEECCCEEEEEEECCCCEEEEECCCCCCCCCCCCEEEEECCCCC
PSWTPPKEMLARRPDLPRFMEGGPENPLGARAMYLGSSLYRIHGSNEPWTIGTNVSSGCI
CCCCCHHHHHHCCCCCCHHHHCCCCCCCCCHHHHHCCEEEEEECCCCCEEEECCCCCCEE
RMRNEDVIDLYGRVNVGARVVVI
EECCCCEEEEEEEECCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7592411; 9097040; 9278503; 9298646 [H]