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The map label for this gene is 86748841

Identifier: 86748841

GI number: 86748841

Start: 1958061

End: 1959644

Strand: Direct

Name: 86748841

Synonym: RPB_1718

Alternate gene names: NA

Gene position: 1958061-1959644 (Clockwise)

Preceding gene: 86748840

Following gene: 86748842

Centisome position: 36.73

GC content: 61.36

Gene sequence:

>1584_bases
ATGAGAGCTGAATCCGGCCAGAGCAGCCGTCGCATTCTGTGCGTTTTTCCGCGCTACACGAAGTCCTTCGGCACCTTCCA
GAACTCCTATCCGCTGATGGACGGGGTCGCGGCCTTCATGCCGCCGCAGGGCCTGCTCGTGATCGCCGCCTATCTGCCGG
AAGACTGGTCGGTGCGTTTCATCGACGAGAATATCCGGCCTGCCACCGATGACGATTTCGATTGGGCCGATGCGGTATTC
GTCAGCGGCATGCACATCCAGCGGCAGCAGATGATCGACATCTGCCGGCGCGCGCACGCTTACGATCTGCCGGCCGCGAT
CGGCGGTCCGTCGGTCAGCGCCTGCCCGGACCACTACCCGAGCTTCGACTATCTGCACGTCGGCGAACTCGGCGATGCCA
CCGATCAGCTGATCGCCCGGCTTGCGCACGACGTGGCGCGGCCAGATCGACAGATCGTCTTCACCACCGAAGATCGCCTC
GACATGACGCTGTTTCCGATTCCGGCCTACGAGCTGGCGGAATGCAGCAAATACATGCTGGGGAGCATCCAGTATTCCAG
CGGCTGCCCGTACCAGTGCGAGTTCTGCGATATCCCCGCGCTCTACGGCCGCAATCCGCGGCTGAAGACCCCGGAGCAGA
TCATCATCGAACTCGACCGCATGGTCGAATGCGGCATTCGCGGCTCGGTGTATTTCGTCGACGACAATTTCATCGGCAAC
CGCAAGGCCGCGCTCGATCTGCTGCCGCATCTCGTCGAGTGGCAGAAGCGTACCGGCTTCGCGCTGCAACTCGCCTGCGA
GGCGACGCTGAACATCGCCAAGCGTCCGGAAATCCTGACGCTGATGCGGGACGCATACTTCACCACGATCTTCTGCGGCA
TCGAGACGCCGGATCCGACGGCGCTGAAAGCGATGCAAAAGGACCACAACATGATGGTCCCGATTCTCGAGGGGGTGCAG
ACGATCTCGAGTTACGGTATCGAAGTGGTGTCCGGCATCATCCTCGGCCTCGACACCGATACGCCGGAGACCGGTGAATT
CCTGATGCAGTTCATCGAGCAGTCGCAGATTCCGCTGCTGACGATCAATCTCCTGCAGGCGCTGCCGAAGACCCCGCTGT
GGGATCGACTGGAGCGTGAAGGTCGGTTGATTCACGACGACGGCCGCGAATCCAATGTCGACTTCCTGTTGCCGCACGAT
CAAGTGGTGGCGATGTGGAAGGACTGCATGGCGCGCGCCTATGAGCCTGAAGCGCTGCTGAGCCGCTACGAATATCAGGT
CCGCCACGCTTACGCGACGCGACTCCATCCGAATACGCCGCAGCGGGCTTCGAAAGCCAACGTCAAGCGCGGCCTGATCA
TGCTGCGCAACATCATCTGGCGTATCGGCATTCGCGGCGACTATAGGTTGGCGTTCTGGAAGTTTGCGCTGCCCCGGCTG
ATTCGCGGCGACATCGAGAATCTGCTTCTGGTGATGGTGGTCGCACACCATCTGATCGTCTATGCACGCGAGGCGTCGCG
CGGTCAGGCCAATGCGTCGAACTATTCGATCCGGCTGCGTGAGGCCTCGGTGCCTGCGGAATAG

Upstream 100 bases:

>100_bases
TGCCAGACGGCTTGAATCATGCCCGTCGTTCGAACCGTTCCGGGCATCCGGTTCACATAACCAAAGACGGTTTCCAAGAA
TAGTTCCCCGAGGGAGTCTG

Downstream 100 bases:

>100_bases
GATTTGTCGCTCGACGTCCCTCGCGTCCCCTGTGCGGCCCAAAAGGGTGAACTATGACTTCGTCTCCGACTGCTCCGCCC
GCGCTCAGCGATCTGCGCCG

Product: radical SAM family protein

Products: NA

Alternate protein names: ORF N [H]

Number of amino acids: Translated: 527; Mature: 527

Protein sequence:

>527_residues
MRAESGQSSRRILCVFPRYTKSFGTFQNSYPLMDGVAAFMPPQGLLVIAAYLPEDWSVRFIDENIRPATDDDFDWADAVF
VSGMHIQRQQMIDICRRAHAYDLPAAIGGPSVSACPDHYPSFDYLHVGELGDATDQLIARLAHDVARPDRQIVFTTEDRL
DMTLFPIPAYELAECSKYMLGSIQYSSGCPYQCEFCDIPALYGRNPRLKTPEQIIIELDRMVECGIRGSVYFVDDNFIGN
RKAALDLLPHLVEWQKRTGFALQLACEATLNIAKRPEILTLMRDAYFTTIFCGIETPDPTALKAMQKDHNMMVPILEGVQ
TISSYGIEVVSGIILGLDTDTPETGEFLMQFIEQSQIPLLTINLLQALPKTPLWDRLEREGRLIHDDGRESNVDFLLPHD
QVVAMWKDCMARAYEPEALLSRYEYQVRHAYATRLHPNTPQRASKANVKRGLIMLRNIIWRIGIRGDYRLAFWKFALPRL
IRGDIENLLLVMVVAHHLIVYAREASRGQANASNYSIRLREASVPAE

Sequences:

>Translated_527_residues
MRAESGQSSRRILCVFPRYTKSFGTFQNSYPLMDGVAAFMPPQGLLVIAAYLPEDWSVRFIDENIRPATDDDFDWADAVF
VSGMHIQRQQMIDICRRAHAYDLPAAIGGPSVSACPDHYPSFDYLHVGELGDATDQLIARLAHDVARPDRQIVFTTEDRL
DMTLFPIPAYELAECSKYMLGSIQYSSGCPYQCEFCDIPALYGRNPRLKTPEQIIIELDRMVECGIRGSVYFVDDNFIGN
RKAALDLLPHLVEWQKRTGFALQLACEATLNIAKRPEILTLMRDAYFTTIFCGIETPDPTALKAMQKDHNMMVPILEGVQ
TISSYGIEVVSGIILGLDTDTPETGEFLMQFIEQSQIPLLTINLLQALPKTPLWDRLEREGRLIHDDGRESNVDFLLPHD
QVVAMWKDCMARAYEPEALLSRYEYQVRHAYATRLHPNTPQRASKANVKRGLIMLRNIIWRIGIRGDYRLAFWKFALPRL
IRGDIENLLLVMVVAHHLIVYAREASRGQANASNYSIRLREASVPAE
>Mature_527_residues
MRAESGQSSRRILCVFPRYTKSFGTFQNSYPLMDGVAAFMPPQGLLVIAAYLPEDWSVRFIDENIRPATDDDFDWADAVF
VSGMHIQRQQMIDICRRAHAYDLPAAIGGPSVSACPDHYPSFDYLHVGELGDATDQLIARLAHDVARPDRQIVFTTEDRL
DMTLFPIPAYELAECSKYMLGSIQYSSGCPYQCEFCDIPALYGRNPRLKTPEQIIIELDRMVECGIRGSVYFVDDNFIGN
RKAALDLLPHLVEWQKRTGFALQLACEATLNIAKRPEILTLMRDAYFTTIFCGIETPDPTALKAMQKDHNMMVPILEGVQ
TISSYGIEVVSGIILGLDTDTPETGEFLMQFIEQSQIPLLTINLLQALPKTPLWDRLEREGRLIHDDGRESNVDFLLPHD
QVVAMWKDCMARAYEPEALLSRYEYQVRHAYATRLHPNTPQRASKANVKRGLIMLRNIIWRIGIRGDYRLAFWKFALPRL
IRGDIENLLLVMVVAHHLIVYAREASRGQANASNYSIRLREASVPAE

Specific function: Unknown

COG id: COG1032

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006158
- InterPro:   IPR006638
- InterPro:   IPR005839
- InterPro:   IPR007197 [H]

Pfam domain/function: PF02310 B12-binding; PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 59838; Mature: 59838

Theoretical pI: Translated: 5.78; Mature: 5.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAESGQSSRRILCVFPRYTKSFGTFQNSYPLMDGVAAFMPPQGLLVIAAYLPEDWSVRF
CCCCCCCCCCEEEEEECCHHHHHCCCCCCCCHHHHHHHHCCCCCEEEEEEECCCCCEEEE
IDENIRPATDDDFDWADAVFVSGMHIQRQQMIDICRRAHAYDLPAAIGGPSVSACPDHYP
EECCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCC
SFDYLHVGELGDATDQLIARLAHDVARPDRQIVFTTEDRLDMTLFPIPAYELAECSKYML
CCCEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEECCCCHHHHHHHHHHH
GSIQYSSGCPYQCEFCDIPALYGRNPRLKTPEQIIIELDRMVECGIRGSVYFVDDNFIGN
CCEEECCCCCCEEEEECCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
RKAALDLLPHLVEWQKRTGFALQLACEATLNIAKRPEILTLMRDAYFTTIFCGIETPDPT
HHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHCCCCHHHHHHHHHHEEEEEEECCCCCHH
ALKAMQKDHNMMVPILEGVQTISSYGIEVVSGIILGLDTDTPETGEFLMQFIEQSQIPLL
HHHHHHHCCCEEHHHHHHHHHHHHHCHHHHHHEEEECCCCCCCHHHHHHHHHHHCCCCEE
TINLLQALPKTPLWDRLEREGRLIHDDGRESNVDFLLPHDQVVAMWKDCMARAYEPEALL
EHHHHHHCCCCCCHHHHHHCCCEEECCCCCCCCCEECCCHHHHHHHHHHHHHCCCHHHHH
SRYEYQVRHAYATRLHPNTPQRASKANVKRGLIMLRNIIWRIGIRGDYRLAFWKFALPRL
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
IRGDIENLLLVMVVAHHLIVYAREASRGQANASNYSIRLREASVPAE
HHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCEEEEEECCCCCCC
>Mature Secondary Structure
MRAESGQSSRRILCVFPRYTKSFGTFQNSYPLMDGVAAFMPPQGLLVIAAYLPEDWSVRF
CCCCCCCCCCEEEEEECCHHHHHCCCCCCCCHHHHHHHHCCCCCEEEEEEECCCCCEEEE
IDENIRPATDDDFDWADAVFVSGMHIQRQQMIDICRRAHAYDLPAAIGGPSVSACPDHYP
EECCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCC
SFDYLHVGELGDATDQLIARLAHDVARPDRQIVFTTEDRLDMTLFPIPAYELAECSKYML
CCCEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEECCCCHHHHHHHHHHH
GSIQYSSGCPYQCEFCDIPALYGRNPRLKTPEQIIIELDRMVECGIRGSVYFVDDNFIGN
CCEEECCCCCCEEEEECCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
RKAALDLLPHLVEWQKRTGFALQLACEATLNIAKRPEILTLMRDAYFTTIFCGIETPDPT
HHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHCCCCHHHHHHHHHHEEEEEEECCCCCHH
ALKAMQKDHNMMVPILEGVQTISSYGIEVVSGIILGLDTDTPETGEFLMQFIEQSQIPLL
HHHHHHHCCCEEHHHHHHHHHHHHHCHHHHHHEEEECCCCCCCHHHHHHHHHHHCCCCEE
TINLLQALPKTPLWDRLEREGRLIHDDGRESNVDFLLPHDQVVAMWKDCMARAYEPEALL
EHHHHHHCCCCCCHHHHHHCCCEEECCCCCCCCCEECCCHHHHHHHHHHHHHCCCHHHHH
SRYEYQVRHAYATRLHPNTPQRASKANVKRGLIMLRNIIWRIGIRGDYRLAFWKFALPRL
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
IRGDIENLLLVMVVAHHLIVYAREASRGQANASNYSIRLREASVPAE
HHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231; 8467083 [H]