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The map label for this gene is yhjC [C]

Identifier: 86748823

GI number: 86748823

Start: 1934581

End: 1935480

Strand: Direct

Name: yhjC [C]

Synonym: RPB_1700

Alternate gene names: 86748823

Gene position: 1934581-1935480 (Clockwise)

Preceding gene: 86748820

Following gene: 86748824

Centisome position: 36.28

GC content: 66.78

Gene sequence:

>900_bases
ATGGACCGTCTCGATGCCATGGCCGCCTTTGTTGCGGTCGCAGACCTCAATGGCTTTGCGCCTGCCGCACGCAAGCTGGG
GCTATCGCCTTCGGCGGTGACGCGGCTGGTCGCTGCGCTGGAGCAGCGTGTCGGCGCGCGTCTGCTGCAGCGGACGACGC
GCTCCGTCGCGCTGACCGATATCGGCGCGCGCTATCTCGAGCGCGTGAAGCGGATCCTGTCCGACGTCGAGGAGGCGGAA
GCTTCGGCCTCCGCCGAACGTATCGATCCTTCGGGACGCCTGGTCGTGTCTGCCCCGGTCGGGTTCGGCCGGCTGCATGT
CGCCCCTCTGATGTCGGACTATCTGCTGCGATATCCCGATGTCGCCGGGGAGCTGCGGCTGTCGGACCGGATCATCAATC
TGGTCGAGGATGGAGTCGATTGCGCCGTCCGCATCGGGCCGCTCGCCGATTCGAGCCTGGTGGCGCGACAGCTCGGGACG
ATGCGACGGATCGTCGTGGCATCGCCGGACTATCTCGGCGCACGCGGCGTGCCGATGGTTCCTGCCGAGGTTGCTGCGCA
CGACACCGTCCATTTCGGCGCCATTACGTCCACGGTGACGTGGCGTTTCGTCGTGGATGGACGCGACGTCCGGGTGGCCT
GCACACCTCGTTTCGCCACCAATGCTGCCGACGCAGCGATCCTGTATGCCGAGCGCGGCGGTGGTCTCACGCGCGTGCTC
GCCTACCAGGCCGCCGAGGCGATCCGCACCGGGCGGCTTCAGGTCGTGTTGGCAGACTACGAAGCGCCGCCATTGCCGAT
CACGATCGTGTATCCGACATCGCGATTATTGTCGGCCAAGGTCCGCACGTTCGTCGATCTCGCGGCGGAGATTTGCGACT
GGCGGTTCGGCGCGGGATAG

Upstream 100 bases:

>100_bases
GCCTCCCATTGTCTGAATGCCAGGCAAAGATGCGCTGCTTCCTGTTTTGCGACAATGATATGAATTGACACTATATTGTT
GCGTATGGTGAAATAATGCC

Downstream 100 bases:

>100_bases
CATCGTGAGGAAAGGGAGTGCGCCTTTGGCGGCCGATCTATTCGAGAATCTGTTCGATGGCCCGAGGCGCGAGGACATCG
CTCCGGGCGCAGCGCTGCTG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MDRLDAMAAFVAVADLNGFAPAARKLGLSPSAVTRLVAALEQRVGARLLQRTTRSVALTDIGARYLERVKRILSDVEEAE
ASASAERIDPSGRLVVSAPVGFGRLHVAPLMSDYLLRYPDVAGELRLSDRIINLVEDGVDCAVRIGPLADSSLVARQLGT
MRRIVVASPDYLGARGVPMVPAEVAAHDTVHFGAITSTVTWRFVVDGRDVRVACTPRFATNAADAAILYAERGGGLTRVL
AYQAAEAIRTGRLQVVLADYEAPPLPITIVYPTSRLLSAKVRTFVDLAAEICDWRFGAG

Sequences:

>Translated_299_residues
MDRLDAMAAFVAVADLNGFAPAARKLGLSPSAVTRLVAALEQRVGARLLQRTTRSVALTDIGARYLERVKRILSDVEEAE
ASASAERIDPSGRLVVSAPVGFGRLHVAPLMSDYLLRYPDVAGELRLSDRIINLVEDGVDCAVRIGPLADSSLVARQLGT
MRRIVVASPDYLGARGVPMVPAEVAAHDTVHFGAITSTVTWRFVVDGRDVRVACTPRFATNAADAAILYAERGGGLTRVL
AYQAAEAIRTGRLQVVLADYEAPPLPITIVYPTSRLLSAKVRTFVDLAAEICDWRFGAG
>Mature_299_residues
MDRLDAMAAFVAVADLNGFAPAARKLGLSPSAVTRLVAALEQRVGARLLQRTTRSVALTDIGARYLERVKRILSDVEEAE
ASASAERIDPSGRLVVSAPVGFGRLHVAPLMSDYLLRYPDVAGELRLSDRIINLVEDGVDCAVRIGPLADSSLVARQLGT
MRRIVVASPDYLGARGVPMVPAEVAAHDTVHFGAITSTVTWRFVVDGRDVRVACTPRFATNAADAAILYAERGGGLTRVL
AYQAAEAIRTGRLQVVLADYEAPPLPITIVYPTSRLLSAKVRTFVDLAAEICDWRFGAG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=303, Percent_Identity=33.003300330033, Blast_Score=162, Evalue=4e-41,
Organism=Escherichia coli, GI1786401, Length=288, Percent_Identity=34.7222222222222, Blast_Score=152, Evalue=2e-38,
Organism=Escherichia coli, GI1787128, Length=290, Percent_Identity=29.3103448275862, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1789639, Length=286, Percent_Identity=29.020979020979, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI87081978, Length=291, Percent_Identity=32.3024054982818, Blast_Score=127, Evalue=6e-31,
Organism=Escherichia coli, GI1789440, Length=292, Percent_Identity=27.7397260273973, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI1787589, Length=284, Percent_Identity=31.3380281690141, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1788706, Length=169, Percent_Identity=27.810650887574, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787879, Length=141, Percent_Identity=37.5886524822695, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32065; Mature: 32065

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRLDAMAAFVAVADLNGFAPAARKLGLSPSAVTRLVAALEQRVGARLLQRTTRSVALTD
CCHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGARYLERVKRILSDVEEAEASASAERIDPSGRLVVSAPVGFGRLHVAPLMSDYLLRYPD
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCC
VAGELRLSDRIINLVEDGVDCAVRIGPLADSSLVARQLGTMRRIVVASPDYLGARGVPMV
CCCCEEHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHEEEEECCCCCCCCCCCCC
PAEVAAHDTVHFGAITSTVTWRFVVDGRDVRVACTPRFATNAADAAILYAERGGGLTRVL
CHHHHHCCCEEECCEEEEEEEEEEECCCEEEEEECCCCCCCCCCEEEEEEECCCCHHHHH
AYQAAEAIRTGRLQVVLADYEAPPLPITIVYPTSRLLSAKVRTFVDLAAEICDWRFGAG
HHHHHHHHHCCCEEEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MDRLDAMAAFVAVADLNGFAPAARKLGLSPSAVTRLVAALEQRVGARLLQRTTRSVALTD
CCHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGARYLERVKRILSDVEEAEASASAERIDPSGRLVVSAPVGFGRLHVAPLMSDYLLRYPD
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCC
VAGELRLSDRIINLVEDGVDCAVRIGPLADSSLVARQLGTMRRIVVASPDYLGARGVPMV
CCCCEEHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHEEEEECCCCCCCCCCCCC
PAEVAAHDTVHFGAITSTVTWRFVVDGRDVRVACTPRFATNAADAAILYAERGGGLTRVL
CHHHHHCCCEEECCEEEEEEEEEEECCCEEEEEECCCCCCCCCCEEEEEEECCCCHHHHH
AYQAAEAIRTGRLQVVLADYEAPPLPITIVYPTSRLLSAKVRTFVDLAAEICDWRFGAG
HHHHHHHHHCCCEEEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]