Definition Rhodopseudomonas palustris HaA2, complete genome.
Accession NC_007778
Length 5,331,656

Click here to switch to the map view.

The map label for this gene is 86748766

Identifier: 86748766

GI number: 86748766

Start: 1872997

End: 1874226

Strand: Direct

Name: 86748766

Synonym: RPB_1643

Alternate gene names: NA

Gene position: 1872997-1874226 (Clockwise)

Preceding gene: 86748765

Following gene: 86748767

Centisome position: 35.13

GC content: 64.88

Gene sequence:

>1230_bases
ATGGTCCGCAACTACGTCATCGTCACGGCCTCCTATTGGGGCTTCACGCTGGTCGACGGCGCGTTGCGGATGCTGGTGCT
ATTTCACTTCTTCCGACTGGGCTACACCCCGTTCACGCTGGCGTTTCTGTTTCTGCTGTATGAGGCAGCCGGCATCGCGG
CGAATCTGGCGGGTGGCTACTTCGCCTCTCGATTCGGCATTCCGCGGATGCTGGCCATTGGTCAGGCGCTGCAGATCGCC
GGCCTGTTGATGCTGTCGGCGCTCGATCCGGCATGGACCGTGGCGGCCTCGGTGGCCTGGGTGGTGGCGGCGCAGGGCAT
CGCCGGCGTCGCCAAGGACCTGACCAAGACCGCTTCGAAATCCGCCATCAAGGCGACCTCGGCGGAGGGCAGCGGGCAGT
TGTTCCGCTGGGTGGCCTGGTTCACCGGATCGAAGAACGCGATGAAGGGCATCGGCTTCTTCCTCGGTGGCCTGTTGCTC
GACCTCGTCGGCTTTCGGCCCGCGCTCTGGCTGATGGCTGCGCTGCTCGGGGTGATCTTTGTCGCTGGTCTGGCTCTGCT
GCCGCGCCAGCTCGGCAAGGCCAAGTCGTCGAAAACGATACGCGAACTGTTCGGCAAGTCGCGCGGCGTGAACCTGCTGG
CCGCCGCCCGCATCTTCATGTTCGGGGCGAGGGACGTCTGGTTCGTCGTCGGCCTTCCTGTGTTCCTGTATGCCAACGGT
TGGCGCTTTCTCGAGGTCGGCGGATTTCTGGCGGCGTGGACGATCGCTTATGGCGGCATCCAGGCAATCGCGCCGAGCCT
GGTGACGCGGAGCGACGACGGCCTCAGCCGCGAAATCCCAGCGGCGCGACTATGGGCCTTGCTCCTCGCCGCGGTGCCGA
TCGTGTTGGCCGTGGCGATGGTCGCAGTCCCGATGGTGCGCCCGGATCTGGTGCTGGTGATCGGTCTGGCGCTGTTCGGC
GTGCCGTTCGCGGTGAATTCGTCGCTGCATTCCTATCTGATCCTGGCCTATGCCGGATCGGAAAAGGCCGCCGAGGATGT
CGGCTTCTACTACGCGGCGAATGCGGCTGGGCGGCTGCTCGGGATCATTCTGTCGGGCGCGCTGTACCAGCTCGCGGGCA
TCACCGGCTGTCTCATGGGATCTGCGGTCATGCTGCTGCTGTGCTGGCTGATCACGCTGGTGTTGCCGGTGACGGCTAGT
CCAACTCCGATCCGACAGCAGCCGATCTGA

Upstream 100 bases:

>100_bases
AGACGTTGCTGAAGGTCTATGCCTGGTACGACAACGAGGTCGGCTATGCCTGCCGGATGGTCGACCTCGCCGCCATCGTG
CAACGCGCGGGCGTCTGACC

Downstream 100 bases:

>100_bases
ATCCCCTCGACCGTTGTCCAAACACATCCGGCCCGAGCGGCCGTCTCAGAAAGCCGTATGAGATTGAGATGGATCAATAC
ATTATGCGTATATGCGCATA

Product: major facilitator transporter

Products: NA

Alternate protein names: Facilitator Superfamily Protein; Facilitator Superfamily Permease; Facilitator Superfamily Multidrug-Efflux Transporter; Membrane Transporter; Facilitator Superfamily Transporter; Multidrug Efflux Transporter MFS Family; Multidrug-Efflux Transporter; Nonfunctional Facilitator Superfamily Protein; MFS Transporter; Transporter-Like Protein; Permease Of Facilitator Superfamily; Nitric Oxide Reductase Cytochrome B Subunit

Number of amino acids: Translated: 409; Mature: 409

Protein sequence:

>409_residues
MVRNYVIVTASYWGFTLVDGALRMLVLFHFFRLGYTPFTLAFLFLLYEAAGIAANLAGGYFASRFGIPRMLAIGQALQIA
GLLMLSALDPAWTVAASVAWVVAAQGIAGVAKDLTKTASKSAIKATSAEGSGQLFRWVAWFTGSKNAMKGIGFFLGGLLL
DLVGFRPALWLMAALLGVIFVAGLALLPRQLGKAKSSKTIRELFGKSRGVNLLAAARIFMFGARDVWFVVGLPVFLYANG
WRFLEVGGFLAAWTIAYGGIQAIAPSLVTRSDDGLSREIPAARLWALLLAAVPIVLAVAMVAVPMVRPDLVLVIGLALFG
VPFAVNSSLHSYLILAYAGSEKAAEDVGFYYAANAAGRLLGIILSGALYQLAGITGCLMGSAVMLLLCWLITLVLPVTAS
PTPIRQQPI

Sequences:

>Translated_409_residues
MVRNYVIVTASYWGFTLVDGALRMLVLFHFFRLGYTPFTLAFLFLLYEAAGIAANLAGGYFASRFGIPRMLAIGQALQIA
GLLMLSALDPAWTVAASVAWVVAAQGIAGVAKDLTKTASKSAIKATSAEGSGQLFRWVAWFTGSKNAMKGIGFFLGGLLL
DLVGFRPALWLMAALLGVIFVAGLALLPRQLGKAKSSKTIRELFGKSRGVNLLAAARIFMFGARDVWFVVGLPVFLYANG
WRFLEVGGFLAAWTIAYGGIQAIAPSLVTRSDDGLSREIPAARLWALLLAAVPIVLAVAMVAVPMVRPDLVLVIGLALFG
VPFAVNSSLHSYLILAYAGSEKAAEDVGFYYAANAAGRLLGIILSGALYQLAGITGCLMGSAVMLLLCWLITLVLPVTAS
PTPIRQQPI
>Mature_409_residues
MVRNYVIVTASYWGFTLVDGALRMLVLFHFFRLGYTPFTLAFLFLLYEAAGIAANLAGGYFASRFGIPRMLAIGQALQIA
GLLMLSALDPAWTVAASVAWVVAAQGIAGVAKDLTKTASKSAIKATSAEGSGQLFRWVAWFTGSKNAMKGIGFFLGGLLL
DLVGFRPALWLMAALLGVIFVAGLALLPRQLGKAKSSKTIRELFGKSRGVNLLAAARIFMFGARDVWFVVGLPVFLYANG
WRFLEVGGFLAAWTIAYGGIQAIAPSLVTRSDDGLSREIPAARLWALLLAAVPIVLAVAMVAVPMVRPDLVLVIGLALFG
VPFAVNSSLHSYLILAYAGSEKAAEDVGFYYAANAAGRLLGIILSGALYQLAGITGCLMGSAVMLLLCWLITLVLPVTAS
PTPIRQQPI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43428; Mature: 43428

Theoretical pI: Translated: 10.38; Mature: 10.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA