| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is 86748495
Identifier: 86748495
GI number: 86748495
Start: 1561996
End: 1562511
Strand: Direct
Name: 86748495
Synonym: RPB_1370
Alternate gene names: NA
Gene position: 1561996-1562511 (Clockwise)
Preceding gene: 86748493
Following gene: 86748496
Centisome position: 29.3
GC content: 56.98
Gene sequence:
>516_bases TTGCCGGAAAGGGCGATTAGCAGGTGCCTCGACGCACTCTGCCATCGGTCCTGTGATGGAAGCCCGACCGATTGGAATCT GGTCTTGTACAAGTTTCTCGAGGCAACAGTTGCCGACCATATGACGCGTTCGGTAAAGCCCGTGACGCGGGAAATGACGA TGCGCGAGCTGGAAGACCAGTTCGAACGCGACGACTACAATGCCTATCCGGTTCTGGAAGGCTCACGCGCGATCGGGCTG GTCACGAAATACGACTTTCTCAATTGTTTCGCGTTTCACCCGACCCAGATGCTGCCGCATTACGACGATCTGATGAACCG CACGGTCGGCGACATCATGACGCCGGACTTCATCTACGTTCATGCCGACACCAAGCTGACGCGGGTGTTGCAATTGATGG TCGAACACCAGACCCGCAGCATCCCGGTGCTGGATGCCGATCGCAGGCTGGAAGGCATCATTTCGCGTGAGGACGTGATC AAGGCGCTGGCGAATTTCACCAAGGTGAAGCCCTAG
Upstream 100 bases:
>100_bases TGGCCGTCATCATGGACATTGTTGCAGGGATAACAAGGCGTCCGGGAAAACGGCGTCGGATTGACCTTGATCAATTCAAT TCCACAAAGCTGCGGTCAAT
Downstream 100 bases:
>100_bases GCCGGGCCGCGCGGCGCTGGGCCGCGGCCGTTCGGTTGGAAACGCCGCTGCATTTGTACTACAAGGCTGCGTGCAGACTC GGTTCGATGCAGCGTTGGAC
Product: CBS domain-containing protein
Products: NA
Alternate protein names: CBS Domain Containing Membrane Protein; tRNA Nucleotidyl Transferase-Related Protein; CBS Domain-Containing Membrane Protein; Signal Transduction Protein
Number of amino acids: Translated: 171; Mature: 170
Protein sequence:
>171_residues MPERAISRCLDALCHRSCDGSPTDWNLVLYKFLEATVADHMTRSVKPVTREMTMRELEDQFERDDYNAYPVLEGSRAIGL VTKYDFLNCFAFHPTQMLPHYDDLMNRTVGDIMTPDFIYVHADTKLTRVLQLMVEHQTRSIPVLDADRRLEGIISREDVI KALANFTKVKP
Sequences:
>Translated_171_residues MPERAISRCLDALCHRSCDGSPTDWNLVLYKFLEATVADHMTRSVKPVTREMTMRELEDQFERDDYNAYPVLEGSRAIGL VTKYDFLNCFAFHPTQMLPHYDDLMNRTVGDIMTPDFIYVHADTKLTRVLQLMVEHQTRSIPVLDADRRLEGIISREDVI KALANFTKVKP >Mature_170_residues PERAISRCLDALCHRSCDGSPTDWNLVLYKFLEATVADHMTRSVKPVTREMTMRELEDQFERDDYNAYPVLEGSRAIGLV TKYDFLNCFAFHPTQMLPHYDDLMNRTVGDIMTPDFIYVHADTKLTRVLQLMVEHQTRSIPVLDADRRLEGIISREDVIK ALANFTKVKP
Specific function: Unknown
COG id: COG0517
COG function: function code R; FOG: CBS domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19781; Mature: 19650
Theoretical pI: Translated: 5.93; Mature: 5.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 7.0 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 6.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPERAISRCLDALCHRSCDGSPTDWNLVLYKFLEATVADHMTRSVKPVTREMTMRELEDQ CCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FERDDYNAYPVLEGSRAIGLVTKYDFLNCFAFHPTQMLPHYDDLMNRTVGDIMTPDFIYV HHCCCCCCCCEECCCCEEEHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHCCCCCEEEE HADTKLTRVLQLMVEHQTRSIPVLDADRRLEGIISREDVIKALANFTKVKP ECCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure PERAISRCLDALCHRSCDGSPTDWNLVLYKFLEATVADHMTRSVKPVTREMTMRELEDQ CHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FERDDYNAYPVLEGSRAIGLVTKYDFLNCFAFHPTQMLPHYDDLMNRTVGDIMTPDFIYV HHCCCCCCCCEECCCCEEEHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHCCCCCEEEE HADTKLTRVLQLMVEHQTRSIPVLDADRRLEGIISREDVIKALANFTKVKP ECCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA