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The map label for this gene is ybaK [H]

Identifier: 86748453

GI number: 86748453

Start: 1514707

End: 1515183

Strand: Reverse

Name: ybaK [H]

Synonym: RPB_1328

Alternate gene names: 86748453

Gene position: 1515183-1514707 (Counterclockwise)

Preceding gene: 86748454

Following gene: 86748452

Centisome position: 28.42

GC content: 68.97

Gene sequence:

>477_bases
ATGTCCAAATCCACCCGCGCGACGCAGACGCTCGACAAGCTCGGCGTCGCCTACACGCTGCACAGCTACGACTACGACCC
CGACGCTGAGTCGATCGGGCTCGCGGCCGCCGCCGCGCTCGGCGTTCCGCCGCGGCGGATGCTGAAATCGCTGATGGCCG
AGCTCGACGGCAAGCCGGTCTGCGCGGTGATCGCCTCCGATCGCGAGGTCAGCATGAAGAAACTCGCGACCGCGCTCGGC
GGCAAGAGCGCCAGGATGATGAAGCCGGCCGACGCCGAGCGGCTGACCGGCTATCATGTCGGCGGCATCTCGCCGTTCGG
CCAGAAGAAGCGCGTGCCGGTGGCGATCGACGAGGCGGCGCTCAGCGAAGCGACCGTCTATCTCAACGGCGGCCAGCGCG
GGCTGCAAATCGAGATCGATCCGCGCGCAGCGGTGACCGCGCTCGGCGCGGTGACGAAGCCGATCGCGGCGGATTGA

Upstream 100 bases:

>100_bases
GCGCCATTGGTGTCACGCCGACTTGCGCGCTACGATGGATCCGTGACCGTTGCGGCCCCACGCGACGGGTGCACGTCGTC
AACGTCGTCCGAGCCCCGCC

Downstream 100 bases:

>100_bases
CGAGGCGGGAGCGCACCGGCCGGTAAATCGTTACTCGCCGCATCGCGCCGTTTTCGGCGGCGTTTGCGCCGGCCGGTTTG
CATCGCGCCGCCCGGGGTCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 157

Protein sequence:

>158_residues
MSKSTRATQTLDKLGVAYTLHSYDYDPDAESIGLAAAAALGVPPRRMLKSLMAELDGKPVCAVIASDREVSMKKLATALG
GKSARMMKPADAERLTGYHVGGISPFGQKKRVPVAIDEAALSEATVYLNGGQRGLQIEIDPRAAVTALGAVTKPIAAD

Sequences:

>Translated_158_residues
MSKSTRATQTLDKLGVAYTLHSYDYDPDAESIGLAAAAALGVPPRRMLKSLMAELDGKPVCAVIASDREVSMKKLATALG
GKSARMMKPADAERLTGYHVGGISPFGQKKRVPVAIDEAALSEATVYLNGGQRGLQIEIDPRAAVTALGAVTKPIAAD
>Mature_157_residues
SKSTRATQTLDKLGVAYTLHSYDYDPDAESIGLAAAAALGVPPRRMLKSLMAELDGKPVCAVIASDREVSMKKLATALGG
KSARMMKPADAERLTGYHVGGISPFGQKKRVPVAIDEAALSEATVYLNGGQRGLQIEIDPRAAVTALGAVTKPIAAD

Specific function: Functions in trans to edit the amino acid from incorrectly charged Cys-tRNA(Pro); has much weaker activity against Ala-tRNA(Pro). Probably compensates for the lack of Cys- tRNA(Pro) editing by ProRS. Additionally serves as a general deacylase with weak ac

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=138, Percent_Identity=40.5797101449275, Blast_Score=106, Evalue=6e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 16524; Mature: 16393

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKSTRATQTLDKLGVAYTLHSYDYDPDAESIGLAAAAALGVPPRRMLKSLMAELDGKPV
CCCCHHHHHHHHHHCEEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCE
CAVIASDREVSMKKLATALGGKSARMMKPADAERLTGYHVGGISPFGQKKRVPVAIDEAA
EEEEECCCCHHHHHHHHHHCCCCCCCCCCCCHHHHCCEECCCCCCCCCCCCCCEEECCCC
LSEATVYLNGGQRGLQIEIDPRAAVTALGAVTKPIAAD
CCEEEEEEECCCCCEEEEECCHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SKSTRATQTLDKLGVAYTLHSYDYDPDAESIGLAAAAALGVPPRRMLKSLMAELDGKPV
CCCHHHHHHHHHHCEEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCE
CAVIASDREVSMKKLATALGGKSARMMKPADAERLTGYHVGGISPFGQKKRVPVAIDEAA
EEEEECCCCHHHHHHHHHHCCCCCCCCCCCCHHHHCCEECCCCCCCCCCCCCCEEECCCC
LSEATVYLNGGQRGLQIEIDPRAAVTALGAVTKPIAAD
CCEEEEEEECCCCCEEEEECCHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10813833 [H]