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The map label for this gene is yfkH [H]

Identifier: 86748374

GI number: 86748374

Start: 1427676

End: 1428746

Strand: Direct

Name: yfkH [H]

Synonym: RPB_1249

Alternate gene names: 86748374

Gene position: 1427676-1428746 (Clockwise)

Preceding gene: 86748373

Following gene: 86748377

Centisome position: 26.78

GC content: 68.16

Gene sequence:

>1071_bases
ATGGCACGAACGAGCTCCGGATTTCTGGCATCGCTGGCCATCGTCGCCGGTGCGAGTGCAGCTGGCTGGATCGCGGGGCG
CGGTGCCCCTGAGCGTGCCGGCGGCAGGCCACGCGAGGCCGCGACGACGATGCCTGCCGCCCCCGCCGTACCGGCGGGGC
GGACGCAAGACGATACCGATCCGCCTGCTGCGCGCTTCCATCAACCGCTTCCCGTCCTGCGCCGGCAATGGAAAGCCGTG
CTCCGCGGCACCTACGCGCGCATCAACGACGACCGGCTGATGCTGGTCGCCGCGGGCGTGGTGTTCTACGGCCTGCTGGC
GTTGTTTCCGGGCATCTCCGCGCTGGTGTCGTCCTACGCGCTGTTCACCGACGGCGGCACCATCAATGGCCATCTGCAGC
AACTTGCCGCCATCGTGCCGGAGGGGACCTATTCGGTGATCGAGGATCAGGTCGGCCGCGTGCTCGCCAATGGCGAGACC
CGGCTGGGACTGGCGTTCCTCTCCAGCCTCGCGCTGGCGCTGTGGAGCGTCAATGGCGGCGTCAAGGCGGTGATCGATGC
ATCGAACGTCGTCTACGACAAGCAGGAGAGCCGCGGCTTCATCAAGCTCAACGCGCTGTCGCTGGGCTTCACCATCGGCG
CCCTCGCGGCGGTGCTGTCGGCGATCGGCCTCGTGATCGCGACCCCGATCGCGCTGTCGATGATCGGGATGGAGGGCCAG
GGCGCGGTGCTGATCGGCTACGGCCGCTGGCCGCTGCTGGCGCTGCTCACCTTCGCCGGGCTCGCGGTGCTGTATCGCCA
CGCGCCCGATCGCGACACGCCGCACTGGCGCTGGGTGTTGCCGGGTTGCGTGTTCGCCACCCTCGCCTGGATCGTCGGTT
CGGCGCTGCTGTCCTATTACCTGGGCAATTTTGCCAATTACGACGCCACCTATGGCTCGCTCGGCGCCGCCATCGGCCTG
ATGATCTGGATGTGGATGACGGCGATCGTGGTGCTGGTCGGCGGCGAACTCAACGCCGAGATCGAGATGCAGGCCAAGGG
CGGCCGCAGACAGCGTTCGTCCGCACGCTGA

Upstream 100 bases:

>100_bases
CACGCACTGACGCGGCGTCCGATCGTGTCCCAAACGCAGCGATGCCCGGCCATGCGCCGGGCATCGGCGTCTGTAGAGGT
CGTGCTGAAGGGAATTGAGG

Downstream 100 bases:

>100_bases
GCAGTTCCACGAAACCCTGCTGATCGCGCCGCGGCGACGCGCGGCGGCTTACGAATCCCGCCGGCTGGCGCTGGTGGCGA
TCGCCGCCGCCGCGGTGCGG

Product: ribonuclease BN, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 356; Mature: 355

Protein sequence:

>356_residues
MARTSSGFLASLAIVAGASAAGWIAGRGAPERAGGRPREAATTMPAAPAVPAGRTQDDTDPPAARFHQPLPVLRRQWKAV
LRGTYARINDDRLMLVAAGVVFYGLLALFPGISALVSSYALFTDGGTINGHLQQLAAIVPEGTYSVIEDQVGRVLANGET
RLGLAFLSSLALALWSVNGGVKAVIDASNVVYDKQESRGFIKLNALSLGFTIGALAAVLSAIGLVIATPIALSMIGMEGQ
GAVLIGYGRWPLLALLTFAGLAVLYRHAPDRDTPHWRWVLPGCVFATLAWIVGSALLSYYLGNFANYDATYGSLGAAIGL
MIWMWMTAIVVLVGGELNAEIEMQAKGGRRQRSSAR

Sequences:

>Translated_356_residues
MARTSSGFLASLAIVAGASAAGWIAGRGAPERAGGRPREAATTMPAAPAVPAGRTQDDTDPPAARFHQPLPVLRRQWKAV
LRGTYARINDDRLMLVAAGVVFYGLLALFPGISALVSSYALFTDGGTINGHLQQLAAIVPEGTYSVIEDQVGRVLANGET
RLGLAFLSSLALALWSVNGGVKAVIDASNVVYDKQESRGFIKLNALSLGFTIGALAAVLSAIGLVIATPIALSMIGMEGQ
GAVLIGYGRWPLLALLTFAGLAVLYRHAPDRDTPHWRWVLPGCVFATLAWIVGSALLSYYLGNFANYDATYGSLGAAIGL
MIWMWMTAIVVLVGGELNAEIEMQAKGGRRQRSSAR
>Mature_355_residues
ARTSSGFLASLAIVAGASAAGWIAGRGAPERAGGRPREAATTMPAAPAVPAGRTQDDTDPPAARFHQPLPVLRRQWKAVL
RGTYARINDDRLMLVAAGVVFYGLLALFPGISALVSSYALFTDGGTINGHLQQLAAIVPEGTYSVIEDQVGRVLANGETR
LGLAFLSSLALALWSVNGGVKAVIDASNVVYDKQESRGFIKLNALSLGFTIGALAAVLSAIGLVIATPIALSMIGMEGQG
AVLIGYGRWPLLALLTFAGLAVLYRHAPDRDTPHWRWVLPGCVFATLAWIVGSALLSYYLGNFANYDATYGSLGAAIGLM
IWMWMTAIVVLVGGELNAEIEMQAKGGRRQRSSAR

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 37494; Mature: 37363

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARTSSGFLASLAIVAGASAAGWIAGRGAPERAGGRPREAATTMPAAPAVPAGRTQDDTD
CCCCCCHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCC
PPAARFHQPLPVLRRQWKAVLRGTYARINDDRLMLVAAGVVFYGLLALFPGISALVSSYA
CCHHHHCCCCHHHHHHHHHHHHHHHHEECCCEEEEHHHHHHHHHHHHHHCCHHHHHHHHH
LFTDGGTINGHLQQLAAIVPEGTYSVIEDQVGRVLANGETRLGLAFLSSLALALWSVNGG
EEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC
VKAVIDASNVVYDKQESRGFIKLNALSLGFTIGALAAVLSAIGLVIATPIALSMIGMEGQ
EEEEEECCHHEECCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GAVLIGYGRWPLLALLTFAGLAVLYRHAPDRDTPHWRWVLPGCVFATLAWIVGSALLSYY
CEEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHH
LGNFANYDATYGSLGAAIGLMIWMWMTAIVVLVGGELNAEIEMQAKGGRRQRSSAR
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC
>Mature Secondary Structure 
ARTSSGFLASLAIVAGASAAGWIAGRGAPERAGGRPREAATTMPAAPAVPAGRTQDDTD
CCCCCHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCC
PPAARFHQPLPVLRRQWKAVLRGTYARINDDRLMLVAAGVVFYGLLALFPGISALVSSYA
CCHHHHCCCCHHHHHHHHHHHHHHHHEECCCEEEEHHHHHHHHHHHHHHCCHHHHHHHHH
LFTDGGTINGHLQQLAAIVPEGTYSVIEDQVGRVLANGETRLGLAFLSSLALALWSVNGG
EEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC
VKAVIDASNVVYDKQESRGFIKLNALSLGFTIGALAAVLSAIGLVIATPIALSMIGMEGQ
EEEEEECCHHEECCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GAVLIGYGRWPLLALLTFAGLAVLYRHAPDRDTPHWRWVLPGCVFATLAWIVGSALLSYY
CEEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHH
LGNFANYDATYGSLGAAIGLMIWMWMTAIVVLVGGELNAEIEMQAKGGRRQRSSAR
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]