Click here to switch to the map view.

The map label for this gene is 86748370

Identifier: 86748370

GI number: 86748370

Start: 1424470

End: 1425693

Strand: Direct

Name: 86748370

Synonym: RPB_1245

Alternate gene names: NA

Gene position: 1424470-1425693 (Clockwise)

Preceding gene: 86748368

Following gene: 86748371

Centisome position: 26.72

GC content: 70.59

Gene sequence:

>1224_bases
ATGGCGCACGACGCTCGAACCCTGGACGAGATCCGACGCGATACCGAACGCGCCCGGGCCGGATTGACGGAAACCGTCGG
CGAGCTGCGGGCAACCGTGGCCGACACCGCGACCGATCTGCGCGAGCGCTACTCGCCGCAGGCGATCAAGGACGACGTGA
CCAGTTACATCAAGACTCGTGGCGAAGAGTTGGCCGACAAGGTCAGCGACAGTATCCGCAACAATCCGGTGCAGGCGGTG
GCGGTCGGCGCGACGCTGGCCTATCCGCTGTGGAAAATCGTCCGCGCGATTCCGGCTCCGGTGCTGATGGTCGGCGCGGG
CCTGTATCTCGCCGGCACCAAGTCGGGCCAGCAACTGACGCAGCGCGCATCCGACGCCGCGGTCGATTTGGCCGGCGATG
TCGAGCGCCGCGCCCGGGCCTTCGGCGCCGATGCGGCCGATACCGCGGAGGCCGCCAGAGAATACGCGACCGGCGCGCTG
CAGGCCGCGGGCGATGCGGCCAGCAGCCGGGCCAATGAGTTCCGGCGAGCCGCGTCGACCACGGCCGCAGAGTTGAAGCA
CAAGGGCGAGGAATTCGGCCGCGCCGTTTCGGCGCAGGCCGACGAACTCGGTCGCACCGCGGCGGCAGCCGGCGGGGCCT
TTGCCGGCGAAGTCGACGACGTCGCCGATCGCGGCGTCGGTATCGCCAGCGCGGTGACGGATACGCTCCGCGACACCGCG
GCCTCGGTCCGCGACACCGCCACCTCGATGCGCGAGAGCGCGGCGGATGCCGCCGTTCGACTCCGCGACAAAGTCGGCGA
GACGGCCGATGCGGGATTGCACGCCGCCGCCCGCGCGCGCGATCGCGCCGCCGATATCAGCCAGCGCGCCGGAAAGAACT
TCACCGAGACGGTCAGTGCCCATCCGCTGCTCGTCGCCGGCGCCGGCCTCCTGATCGGCGGCCTGATCGCCAGCGCGATC
CCGCGGCTGCGCGCCGAAAAGCAGGTGTTCGGCGACGCCAGCCGCCGGGTGCGTGAACGCGCCGAGGAAACGGTGACGCG
CGGCGTCGAGGCGGTGAAACAGAAGGGCCGCGATGTCCTGGACAGCGCGGCCGGTGCCGCGGAGGACGAGGGACTGACGC
GTGAGAGCATGGGCGGTCAGGTTCGCGATCTCGGCGATCGCGCCCGCAAGGTCGCCGAAGCAGCGGTCTCGACATTCGAG
TCGCCGTCGCAGAACAAGCATTGA

Upstream 100 bases:

>100_bases
GTTCGGGAGGGGAGCGACCATCTGATGTCATGAATGTCCTGTGACTGAGGAACATCGTCAGCTCTATCGAGTTGGACGAT
CACAACTTCTGGAGGAACCG

Downstream 100 bases:

>100_bases
GACACAGGGACGGAGATCATCATGGCTGAACAGATCGAGAAGACAGGGAACGGCGCCGGCGGAACGCGGTCGCAGCCGTT
GAAGTCGGTGAAGAAGGAAG

Product: late embryogenesis abundant protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 406

Protein sequence:

>407_residues
MAHDARTLDEIRRDTERARAGLTETVGELRATVADTATDLRERYSPQAIKDDVTSYIKTRGEELADKVSDSIRNNPVQAV
AVGATLAYPLWKIVRAIPAPVLMVGAGLYLAGTKSGQQLTQRASDAAVDLAGDVERRARAFGADAADTAEAAREYATGAL
QAAGDAASSRANEFRRAASTTAAELKHKGEEFGRAVSAQADELGRTAAAAGGAFAGEVDDVADRGVGIASAVTDTLRDTA
ASVRDTATSMRESAADAAVRLRDKVGETADAGLHAAARARDRAADISQRAGKNFTETVSAHPLLVAGAGLLIGGLIASAI
PRLRAEKQVFGDASRRVRERAEETVTRGVEAVKQKGRDVLDSAAGAAEDEGLTRESMGGQVRDLGDRARKVAEAAVSTFE
SPSQNKH

Sequences:

>Translated_407_residues
MAHDARTLDEIRRDTERARAGLTETVGELRATVADTATDLRERYSPQAIKDDVTSYIKTRGEELADKVSDSIRNNPVQAV
AVGATLAYPLWKIVRAIPAPVLMVGAGLYLAGTKSGQQLTQRASDAAVDLAGDVERRARAFGADAADTAEAAREYATGAL
QAAGDAASSRANEFRRAASTTAAELKHKGEEFGRAVSAQADELGRTAAAAGGAFAGEVDDVADRGVGIASAVTDTLRDTA
ASVRDTATSMRESAADAAVRLRDKVGETADAGLHAAARARDRAADISQRAGKNFTETVSAHPLLVAGAGLLIGGLIASAI
PRLRAEKQVFGDASRRVRERAEETVTRGVEAVKQKGRDVLDSAAGAAEDEGLTRESMGGQVRDLGDRARKVAEAAVSTFE
SPSQNKH
>Mature_406_residues
AHDARTLDEIRRDTERARAGLTETVGELRATVADTATDLRERYSPQAIKDDVTSYIKTRGEELADKVSDSIRNNPVQAVA
VGATLAYPLWKIVRAIPAPVLMVGAGLYLAGTKSGQQLTQRASDAAVDLAGDVERRARAFGADAADTAEAAREYATGALQ
AAGDAASSRANEFRRAASTTAAELKHKGEEFGRAVSAQADELGRTAAAAGGAFAGEVDDVADRGVGIASAVTDTLRDTAA
SVRDTATSMRESAADAAVRLRDKVGETADAGLHAAARARDRAADISQRAGKNFTETVSAHPLLVAGAGLLIGGLIASAIP
RLRAEKQVFGDASRRVRERAEETVTRGVEAVKQKGRDVLDSAAGAAEDEGLTRESMGGQVRDLGDRARKVAEAAVSTFES
PSQNKH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42545; Mature: 42414

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHDARTLDEIRRDTERARAGLTETVGELRATVADTATDLRERYSPQAIKDDVTSYIKTR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
GEELADKVSDSIRNNPVQAVAVGATLAYPLWKIVRAIPAPVLMVGAGLYLAGTKSGQQLT
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHEECCCCHHHHH
QRASDAAVDLAGDVERRARAFGADAADTAEAAREYATGALQAAGDAASSRANEFRRAAST
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
TAAELKHKGEEFGRAVSAQADELGRTAAAAGGAFAGEVDDVADRGVGIASAVTDTLRDTA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHH
ASVRDTATSMRESAADAAVRLRDKVGETADAGLHAAARARDRAADISQRAGKNFTETVSA
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCC
HPLLVAGAGLLIGGLIASAIPRLRAEKQVFGDASRRVRERAEETVTRGVEAVKQKGRDVL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
DSAAGAAEDEGLTRESMGGQVRDLGDRARKVAEAAVSTFESPSQNKH
HHHCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
AHDARTLDEIRRDTERARAGLTETVGELRATVADTATDLRERYSPQAIKDDVTSYIKTR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
GEELADKVSDSIRNNPVQAVAVGATLAYPLWKIVRAIPAPVLMVGAGLYLAGTKSGQQLT
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHEECCCCHHHHH
QRASDAAVDLAGDVERRARAFGADAADTAEAAREYATGALQAAGDAASSRANEFRRAAST
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
TAAELKHKGEEFGRAVSAQADELGRTAAAAGGAFAGEVDDVADRGVGIASAVTDTLRDTA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHH
ASVRDTATSMRESAADAAVRLRDKVGETADAGLHAAARARDRAADISQRAGKNFTETVSA
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCC
HPLLVAGAGLLIGGLIASAIPRLRAEKQVFGDASRRVRERAEETVTRGVEAVKQKGRDVL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
DSAAGAAEDEGLTRESMGGQVRDLGDRARKVAEAAVSTFESPSQNKH
HHHCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA