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The map label for this gene is yngJ [H]

Identifier: 86748364

GI number: 86748364

Start: 1418183

End: 1419319

Strand: Reverse

Name: yngJ [H]

Synonym: RPB_1239

Alternate gene names: 86748364

Gene position: 1419319-1418183 (Counterclockwise)

Preceding gene: 86748365

Following gene: 86748363

Centisome position: 26.62

GC content: 68.78

Gene sequence:

>1137_bases
ATGGATCTCACGCCCAGTGACGAACAGCGGCTGCTGCGCGAAAGCGCCGACCGCTTCATCAACGAGACCTACACCAGCAA
GCTGCGCGAGCAGAACGCCAAAGAACCGCTCGGCTTCAGCCAGGCGATCTGGAAACAGTTCGCCGAGCTCGGCTGGCTGG
CGCTGCCGATCGCCGAGGAGCACGGCGGCATCGGCGGCGGCGCGATCGAGGTCGGCATCCTGATGGAAGCGTTCGGTCGC
GGTCTCGTCAGCGAGCCTTATCTGTCGACCGTGGTGCTCGGCGCAGGCCTCGTTGCCGCGCACGGCCGTGACGACCAGAA
GGCGGCGCTGCTGCCGCAGGTCGCCGAGGGCACACTGCGGCTCGCCTTCGCGCATGCCGAACGCGCCGCGCGCGCAAACC
TGTCGCGCGTTGACACCACGGCGCGCAAGGACGGCGACAACTACGTCCTCGATGGCGCCAAGGTCGCGGTGCTGGACGGC
GCGGCGGCCGATCAGCTGATCGTTTCGGCGCGGCTGGCGAACAACGGCAGCGGTTCGCTGCGTTTGTTCATGGTGCCGCG
CGACGCGCCGGGACTGGCGCTCGCCGACTATCCGCGACTCGGCGGCGGCCGGGCGTGCAATCTGACGCTGCAAGGCGTGC
GGGTGCCGGCGGACGCGCTACTCGGCGACGACGGCGATGCGTATCCGGCGATCGAGGCCGTGGTCGATCGCGCCCTCGCC
GCGATGTCCGCCGAAGCCGTCGGCATGATGCAGACACTGACCGACAAGACGCTCGACTACACCAAAGTTCGAAAACAGTT
CGGCAAGCCGCTCGCGGCCAATCAGGTGATCCGGCATCGCCTCACCGACATGTCGGTGCAGGTGGATGAAGCTCGCTCGA
TGGCGCTGCGCGCGGCGCTGAAGGCCGATGCGGACGCCGCCGAACGCGGCCGCGCCGCCTCCGGCGCCAAGGCCAAGATC
GGCAAGGGCGCGCGCTTCGTCGCCGAGCAATCCGTGCAGCTGCATGGCGGCATGGGCGTCACCGAGGAGCTCGACGTCGG
CGCGTACTTCAAACGCCTGCTGGCGTTCGAGACGCTGTTCGGCGGCAGCACCCATCATTATCGCCGCCACGCCGCGCTCA
GCGGCCGGCCTGTTTAA

Upstream 100 bases:

>100_bases
CATCAGCTTTGTCACGCACACAATCTGCAGGAGTTTGGAATGATCGTCGATCCGTCGGGACTGCATCCGTCGGTGCGCAA
GCAAGTGAAGGTGTAAGGCG

Downstream 100 bases:

>100_bases
GCAAAGCGAGGCATCGACATGGACATGACCTTCGGCGATTCCGAGCTCGCCTTTCAGCAGGAGGTCCGCGATTTCATCGC
GGCCAATCTCACGCCCGACA

Product: Acyl-CoA dehydrogenase-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MDLTPSDEQRLLRESADRFINETYTSKLREQNAKEPLGFSQAIWKQFAELGWLALPIAEEHGGIGGGAIEVGILMEAFGR
GLVSEPYLSTVVLGAGLVAAHGRDDQKAALLPQVAEGTLRLAFAHAERAARANLSRVDTTARKDGDNYVLDGAKVAVLDG
AAADQLIVSARLANNGSGSLRLFMVPRDAPGLALADYPRLGGGRACNLTLQGVRVPADALLGDDGDAYPAIEAVVDRALA
AMSAEAVGMMQTLTDKTLDYTKVRKQFGKPLAANQVIRHRLTDMSVQVDEARSMALRAALKADADAAERGRAASGAKAKI
GKGARFVAEQSVQLHGGMGVTEELDVGAYFKRLLAFETLFGGSTHHYRRHAALSGRPV

Sequences:

>Translated_378_residues
MDLTPSDEQRLLRESADRFINETYTSKLREQNAKEPLGFSQAIWKQFAELGWLALPIAEEHGGIGGGAIEVGILMEAFGR
GLVSEPYLSTVVLGAGLVAAHGRDDQKAALLPQVAEGTLRLAFAHAERAARANLSRVDTTARKDGDNYVLDGAKVAVLDG
AAADQLIVSARLANNGSGSLRLFMVPRDAPGLALADYPRLGGGRACNLTLQGVRVPADALLGDDGDAYPAIEAVVDRALA
AMSAEAVGMMQTLTDKTLDYTKVRKQFGKPLAANQVIRHRLTDMSVQVDEARSMALRAALKADADAAERGRAASGAKAKI
GKGARFVAEQSVQLHGGMGVTEELDVGAYFKRLLAFETLFGGSTHHYRRHAALSGRPV
>Mature_378_residues
MDLTPSDEQRLLRESADRFINETYTSKLREQNAKEPLGFSQAIWKQFAELGWLALPIAEEHGGIGGGAIEVGILMEAFGR
GLVSEPYLSTVVLGAGLVAAHGRDDQKAALLPQVAEGTLRLAFAHAERAARANLSRVDTTARKDGDNYVLDGAKVAVLDG
AAADQLIVSARLANNGSGSLRLFMVPRDAPGLALADYPRLGGGRACNLTLQGVRVPADALLGDDGDAYPAIEAVVDRALA
AMSAEAVGMMQTLTDKTLDYTKVRKQFGKPLAANQVIRHRLTDMSVQVDEARSMALRAALKADADAAERGRAASGAKAKI
GKGARFVAEQSVQLHGGMGVTEELDVGAYFKRLLAFETLFGGSTHHYRRHAALSGRPV

Specific function: Unknown

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4557233, Length=356, Percent_Identity=30.3370786516854, Blast_Score=137, Evalue=1e-32,
Organism=Homo sapiens, GI226958412, Length=376, Percent_Identity=27.1276595744681, Blast_Score=132, Evalue=5e-31,
Organism=Homo sapiens, GI4501859, Length=356, Percent_Identity=27.247191011236, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI4501857, Length=353, Percent_Identity=27.7620396600567, Blast_Score=121, Evalue=1e-27,
Organism=Homo sapiens, GI226958414, Length=341, Percent_Identity=27.2727272727273, Blast_Score=119, Evalue=6e-27,
Organism=Homo sapiens, GI187960098, Length=355, Percent_Identity=27.3239436619718, Blast_Score=115, Evalue=6e-26,
Organism=Homo sapiens, GI4557231, Length=355, Percent_Identity=27.3239436619718, Blast_Score=115, Evalue=6e-26,
Organism=Homo sapiens, GI7656849, Length=352, Percent_Identity=23.5795454545455, Blast_Score=109, Evalue=5e-24,
Organism=Homo sapiens, GI21361497, Length=381, Percent_Identity=24.6719160104987, Blast_Score=99, Evalue=5e-21,
Organism=Homo sapiens, GI76496475, Length=351, Percent_Identity=25.6410256410256, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI4557235, Length=351, Percent_Identity=25.6410256410256, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI4503943, Length=386, Percent_Identity=26.1658031088083, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI7669494, Length=366, Percent_Identity=25.6830601092896, Blast_Score=90, Evalue=3e-18,
Organism=Escherichia coli, GI87081958, Length=365, Percent_Identity=26.027397260274, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1786223, Length=361, Percent_Identity=22.9916897506925, Blast_Score=80, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17534899, Length=357, Percent_Identity=26.3305322128852, Blast_Score=115, Evalue=4e-26,
Organism=Caenorhabditis elegans, GI17538396, Length=375, Percent_Identity=24.5333333333333, Blast_Score=115, Evalue=4e-26,
Organism=Caenorhabditis elegans, GI17508101, Length=355, Percent_Identity=24.7887323943662, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17506239, Length=324, Percent_Identity=25.3086419753086, Blast_Score=108, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI17569725, Length=352, Percent_Identity=26.1363636363636, Blast_Score=108, Evalue=6e-24,
Organism=Caenorhabditis elegans, GI71985184, Length=350, Percent_Identity=27.1428571428571, Blast_Score=104, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI17570075, Length=355, Percent_Identity=25.6338028169014, Blast_Score=96, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17533517, Length=354, Percent_Identity=23.728813559322, Blast_Score=96, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI71990804, Length=257, Percent_Identity=24.9027237354086, Blast_Score=95, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI32563615, Length=234, Percent_Identity=26.4957264957265, Blast_Score=91, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI17505929, Length=312, Percent_Identity=26.9230769230769, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17551932, Length=312, Percent_Identity=25.3205128205128, Blast_Score=88, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI71982178, Length=275, Percent_Identity=25.4545454545455, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI71985192, Length=297, Percent_Identity=27.2727272727273, Blast_Score=86, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17534353, Length=385, Percent_Identity=23.8961038961039, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24646207, Length=367, Percent_Identity=29.1553133514986, Blast_Score=138, Evalue=8e-33,
Organism=Drosophila melanogaster, GI21355753, Length=371, Percent_Identity=26.9541778975741, Blast_Score=127, Evalue=2e-29,
Organism=Drosophila melanogaster, GI21356377, Length=348, Percent_Identity=28.1609195402299, Blast_Score=122, Evalue=6e-28,
Organism=Drosophila melanogaster, GI24666513, Length=369, Percent_Identity=25.2032520325203, Blast_Score=114, Evalue=1e-25,
Organism=Drosophila melanogaster, GI24660351, Length=354, Percent_Identity=27.4011299435028, Blast_Score=109, Evalue=3e-24,
Organism=Drosophila melanogaster, GI281363737, Length=388, Percent_Identity=24.4845360824742, Blast_Score=103, Evalue=3e-22,
Organism=Drosophila melanogaster, GI19920834, Length=385, Percent_Identity=25.7142857142857, Blast_Score=91, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 40183; Mature: 40183

Theoretical pI: Translated: 7.30; Mature: 7.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLTPSDEQRLLRESADRFINETYTSKLREQNAKEPLGFSQAIWKQFAELGWLALPIAEE
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCEEEEEEHHH
HGGIGGGAIEVGILMEAFGRGLVSEPYLSTVVLGAGLVAAHGRDDQKAALLPQVAEGTLR
CCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHEECCCCCCHHHHHHHHHCCCEE
LAFAHAERAARANLSRVDTTARKDGDNYVLDGAKVAVLDGAAADQLIVSARLANNGSGSL
EHHHHHHHHHHCCHHHHHHHHHCCCCCEEECCCEEEEECCCCHHHHHHHHHHCCCCCCCE
RLFMVPRDAPGLALADYPRLGGGRACNLTLQGVRVPADALLGDDGDAYPAIEAVVDRALA
EEEEEECCCCCCEEECCCCCCCCCEEEEEEECEECCHHHHCCCCCCCHHHHHHHHHHHHH
AMSAEAVGMMQTLTDKTLDYTKVRKQFGKPLAANQVIRHRLTDMSVQVDEARSMALRAAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCEEEHHHHHHHHHHHHH
KADADAAERGRAASGAKAKIGKGARFVAEQSVQLHGGMGVTEELDVGAYFKRLLAFETLF
HCCCCHHHCCCCCCCCCHHCCCCHHHHHHCCEEEECCCCCCHHCCHHHHHHHHHHHHHHH
GGSTHHYRRHAALSGRPV
CCCCHHHHHHHCCCCCCC
>Mature Secondary Structure
MDLTPSDEQRLLRESADRFINETYTSKLREQNAKEPLGFSQAIWKQFAELGWLALPIAEE
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCEEEEEEHHH
HGGIGGGAIEVGILMEAFGRGLVSEPYLSTVVLGAGLVAAHGRDDQKAALLPQVAEGTLR
CCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHEECCCCCCHHHHHHHHHCCCEE
LAFAHAERAARANLSRVDTTARKDGDNYVLDGAKVAVLDGAAADQLIVSARLANNGSGSL
EHHHHHHHHHHCCHHHHHHHHHCCCCCEEECCCEEEEECCCCHHHHHHHHHHCCCCCCCE
RLFMVPRDAPGLALADYPRLGGGRACNLTLQGVRVPADALLGDDGDAYPAIEAVVDRALA
EEEEEECCCCCCEEECCCCCCCCCEEEEEEECEECCHHHHCCCCCCCHHHHHHHHHHHHH
AMSAEAVGMMQTLTDKTLDYTKVRKQFGKPLAANQVIRHRLTDMSVQVDEARSMALRAAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCEEEHHHHHHHHHHHHH
KADADAAERGRAASGAKAKIGKGARFVAEQSVQLHGGMGVTEELDVGAYFKRLLAFETLF
HCCCCHHHCCCCCCCCCHHCCCCHHHHHHCCEEEECCCCCCHHCCHHHHHHHHHHHHHHH
GGSTHHYRRHAALSGRPV
CCCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9387222; 9384377 [H]